RNA id: XR_004579334.1


Basic Information

Item Value
RNA id XR_004579334.1
length 3222
RNA type misc_RNA
GC content 0.44
exon number 12
gene id luc7l3
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11567119 ~ 11577823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actggaaaaaaatatctgtTGTGTGGAGCGCCGCTGCCATTTTGTTAGGACGAGTGAATTCGGAAACGTCTGGCGAAAGCGTCTGTATGTAAACGAATTAGAGCGGAAGGTTTTAGCTGGTTGCTTTTGAATAAAATCGAAGCAAAATGCTCTCCGCAGCCCAGTTACTCGATGAGTTAATGGGCCGAGACAGAAACTTGGCCCCTGATGAAAAGCGCTGCAATGTTCGCTGGGACCACGAGACTGTCTGCAAATATTATCTGTGTGGCTTTTGCCCAGCTGAACTGTTCACCAACACGCGCTCTGATTTGGGACCTTGTGAAAAGATTCATGATGAAAACTTGCGAAAAATGTATGAGAAGAGCTCCCGGTTCATGAAGGAAGGCTACGAGAGAGACTTCCTGAGGTACCTGCAGAGTTTGTTGGCTGAGGTGGAGCGCCGGATCCGGAGAGGCCATGCCAGACTGGCACTGTCACAGGCCCAGCAGAACTCTGGAGGTCCTACTCTTTCTGGGAAGAATGAGGAGAAGGCTCAGGTGCTCACAGAGAAGATTGAGGCACTTGTTGTCCAGATTGAAGAGCTTGGCTCAGAAGGGCGTGTAGAGGAAGCTCAGGGCATGATGAAGCTGGTGGAACAGctgaaggaggagagagagcagctcaGCTCAACACCATCTACAATTGAGAGCTTTGCTGCTCAGGAGAAGCAGAtggaggtgtgtgaggtgtgcgGTGCGTTCCTCATTGTTGGTGATGCTCAGTCCAGAGTAGATGACCATCTAATGGGCAAACAGCATATGGGATATGCTAAAATTAAATCTACTGTGGAGGAACTCAAGGAAAAACTGCGTCGGCGCTCAGAGGACCCAGAAAGAGACGATCGGGcgaagagggaaagagagagggaagacAGGGAGCGTGAAAGGGAGGAGCGTGAGAAGAGACgcaaggaggaagaggagatgcgagagaaggagagagagaaagagcgagagagagagcgtgagcgGGAacgcgagcgagagagagagcgggagcGGGAGAGAGAGCGTGAGCGTGAAAGACGCAGCAAAAGGAGTCATTCGCGCAGCCGCCACTCGAGTCGGGCCTCTGACCGCCGCAGGAGCCGATCTCGGGACAGACGGAGAAGCAGAAGCAAGGACAGGGAGAGGGACAGGAAGCGCAGCAGGAGTCGTGACCGTGAGAGGAGGCGCAGCAGGGAGCGCTCTGACAGGAAGAGACGTTCACGCAGCAAGGAACGAAAGAGGTCCCGCAGCTCTGAGCGCAAGAGCCACAGACACCGCAGCCGCAGtcgagacagagacagagacaaagacagagagaaggataaAACTGCCAGAGACAAAGAGCACAAGgacacagaagagaaaaaaggcagTGGAAAGGGCTCAAGTGATGAACGGCCCAGCGAGCCCTCAAAGTCTGAGCCCATGGAGGTAGAGCCTCCTAAAGCAGAGCTGAACGGCACCACTGAAGACCTCCATTCTGAAGGTGACACTCAGTCCAATTAAAACTGATCTGATAGGACCTCAGATCAGCTCCAGTGCATCGTAAGTATGCACTGAAGATGGAACTAGAGGCTGAAACAGAAGAAGGTAGAATGAAACATACCCAGAGGGAAAAGCCAGTGTAGTCCTGAAAAACATGCCTGGAGCGTTGGTGTTGTGAGCGACCCCATGAAAAGCCAAATTAAAAATCAAGGATACTGTCAAACTGTGCAGGTACTCACCCAAGGTACTCCTTTCTCTACCCACATCCATTTGAATGCTGTTACCTGTGAACGTGTTTCAGAGCTTGATGTTCTTGGTTTCTTTTGATAATGcttatttctttcattattaACTAAGGTTAAGATCTTCagattttgttcttttctcttgGTTTTTAAATGCTAATCACATGTGAAAGGTGGAGTAAAATGTTGGGATTTACAGATGAACCCGGTTGATATCCCAGAGTCGACGTTATTAGAGCTTAATCACCCTTGCCCGCTTTTCAGATCAATTAGATTTTCCTTTGTGTTTTGGGCTTTTTGTTACTTTGGTTTTCAGTTTGATTGTTGAAGCTGTAGTAGTTCCATAATATGTTTCAAACCAAATTTGAACTAAGCAGCTTGATCAATAGGTaatcaactttttttattttatttttatttttttggcaatCACAGTATAGTGCACCTGCTTCTCTATCCCTCGTTGTCAGCGCCATGTAGACGAGGGGATATCAAGCGGGTTACTCttcaagggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaacataagtcCATAAATTTTTTCATGCTTCCagggttttgtttgtgtgctttCTCCTAATCTCTTGTTCAAATGAAGAGTCAATAATTTTTGTCATGCTGGTCAACGTACAGCAAAGTCCAAAGCAATTAGTAAGGAAGTAAATGAGGAAATACTGAAATGTACAGCAGTCAAAATTGTCTTCACTGTACTGTTCACTGTTTGATTGGCTAAAGTCATAAACTACAGTTTGTCTTTGTAGCTAATGCTATAACAATACAAAAGCTAAAGCTAATTGACCATGGTCATGCagaagttttatttttcctatttttgtgCACAGTATATGACTCTTTTTCTTTGAGTAAATGGGATTTCAACTACTAATTGACTCTCTCTGACTATTTGTGCACGTCAGGGGATGCTGGGACAGCTGAGTGAAGAAGACCTGAAGACCTCCGAACTTTTGCCATGCATACTCCGCTGCTTAAAACAAGGTGAACCAGATGTAGTGGCCTAATTAGGATAAAATATAaggaaaacatgtaaaaattgTTCTGTTGCCCTTTACAGCCAGTTTCACAGGACCTTGTTTTTACtccatttgtttttcttcattctttacTGTTATGAGCTTAAAAGCCTTTAATTACGCAAAGGGCcaatttaatttttgttaataTACTCAGTGAACCTGTAAACATGTTTGCTTTGCACAGTTGGGTCTCACGTCACGTTTTAGATTTTGAAGACCAGTTTTGGAGAGTAATGTACAGTGTTTGAACGGAGATTCTGATTGGGCTCTCTGACGCTTAACTTTCTTCCCTCTCTGTAAGCTTATATCCCAAATGTTCGATCAATTTTAGTTTAGAAAAACtggattttcattttgtttgaattttaaaaagctgtatTTGTCTTCAATAAAAAGTCCAAATGAATTCAC

Function

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0005685 U1 snRNP cellular_component
GO:0003729 mRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247909 lncRNA upstream 188319 11280080 ~ 11378800 (+) True cdc42ep4a
TU247679 lncRNA upstream 584826 10971980 ~ 10982293 (+) False LOC117598771
XR_004579343.1 lncRNA upstream 585029 10971721 ~ 10982090 (+) True LOC117598771
XR_004579342.1 lncRNA upstream 585041 10971721 ~ 10982078 (+) False LOC117598771
TU247667 lncRNA upstream 619578 10943255 ~ 10947541 (+) True G209069
TU248035 lncRNA downstream 40212 11618035 ~ 11618234 (+) True G209390
TU248037 lncRNA downstream 56089 11633912 ~ 11634481 (+) True G209392
TU248059 lncRNA downstream 130905 11708728 ~ 11708936 (+) True G209410
XR_003402931.2 lncRNA downstream 230438 11808261 ~ 11822910 (+) True LOC113528367
TU248481 lncRNA downstream 442040 12019863 ~ 12021132 (+) True G209775
XM_026916035.2 mRNA upstream 6290 11538334 ~ 11560829 (+) False unm_sa1261
XM_026916034.2 mRNA upstream 6290 11546351 ~ 11560829 (+) True unm_sa1261
XM_026916080.2 mRNA upstream 31427 11531521 ~ 11535692 (+) True atp5pd
XM_026916938.2 mRNA upstream 58330 11500895 ~ 11508789 (+) True ndel1b
XM_026916939.2 mRNA upstream 58330 11500903 ~ 11508789 (+) False ndel1b
XM_026917186.2 mRNA downstream 737 11578560 ~ 11601412 (+) True si:ch73-281f12.4
XM_026916066.2 mRNA downstream 48459 11626282 ~ 11633673 (+) True gcat
XM_034310071.1 mRNA downstream 57502 11635325 ~ 11642057 (+) True mcm5
XM_026916691.2 mRNA downstream 70326 11648149 ~ 11657127 (+) True foxred2
XM_034310072.1 mRNA downstream 70453 11648276 ~ 11657127 (+) False foxred2
XR_003402977.1 other upstream 29954 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1149238 10349402 ~ 10417881 (+) False G208781
TU247338 other upstream 1149238 10372415 ~ 10417881 (+) False G208781
TU247339 other upstream 1149238 10412984 ~ 10417881 (+) True G208781
XR_003402918.2 other upstream 1587165 9944306 ~ 9979954 (+) False rapgefl1
XR_003402925.2 other downstream 580883 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 1898005 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 4235419 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 4340394 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 4562507 16140330 ~ 16145384 (+) False LOC113527983

Expression Profile