RNA id: XM_026917193.2


Basic Information

Item Value
RNA id XM_026917193.2
length 2057
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC113528569
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13241850 ~ 13268174 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taAAGCCAGTCCCTCCTCTTAAAACATTAGGACTCCGCGTCCTGCCCTCATTCAgGCTTGGAATGGATGAGGCAGAAAAGTATCAGCAGAGGCTGCAGGCCATTGCAgAGAAGAGGCGAATgcaagaagaggaggagaaagtcAGGAGGGAGATGGAGGAAGAGCGGTTGAAACTTGCTCAAGACAAGaGGAAGTCTCGGAGAGAGCAGTGGCTGATGGAAGCGACCCCCAGCAGTGCTGAGGATCCTAAACTGCAGTCTGTGGTTTCCACTCCTCAGACAACAGAGCAGCGTGCGGAAGAAACACAAAgctcagagagacagatgaaaacAGACGTGGAAAAAAGTGAGACCATGAATGAAGAATCTTCACAGATTGGGGAGAATGAGCCTTCAGTCCATTCCACAGACAACACAGAGAAGCCTGCGCAGgaaTACctgggagaggaggagagaaatgTGCTTGGGGTgttggaggtggaggtggaagtGGAGGGAAACCTGCTTTCAAAAGCAGCACAGGAGGATACCGAGGAAAAGAGAAATGCAAAGACAGAAGAGCAAGAGGTTGCTCAATTAGCAATGGATCTACCCCACCATTTATTACAGCATAATAAGACACCAGATGAGGCCCTTAATTCTTTAGCTGATCGAAAAATGGAGCTAATTATGGCAGAAGATGATGCTGAGGTAGAGGAGGAAGAATGGGAGATGGTGAATTGTAGTCCAGAAGAAGGCCTGGACATGGTGCTGACATGTGACTTAACACAGGCTCAGACAGATTCAAGCTTGGGTCATAAAGGTGATGGAGCTGTTCTGAAGGTGGAGCAGGTCTTCATCATGGACGAAGAAGAGGATCTAGAGATTGGTGCATCTGAGGTGCTGAGCCTTGTTGTGGCTGAGAAGTCGTCTGATCTTCAAGACACATCCTGTGAATTTCAGTCAGAAAGAAGCCAAGAGGAAAGACCTCCTGAGGGTGCATTACAAACTCCTTGTTTTGGAAAAGGGGCACTTGTAGGTACATCTGCCCCTTTGCAGGAGCTGAGTAATGTGTCAGGTATAATTTCTGAGGAGTCTCCAGAATGTAAACAGCCTCTGCTACACCTTCCAGTACATACCTCACAGGCTGTAAAAGAAATTCTTGGAGATAATACAGAATACAAAGGGGACCAAGGTATATCTGCAAGCAGGATTGTAAAAATGGAATGGAAGGAGACATCAGGTCCTGAAGATGAAGTGTTTCAATATATCCCAttagatagaaaaagagagaaatctcCACCCGTGTTGCAGAGGGAAATGGTTGCACAAAGCATTGAGCAAGAGTCAGAAATACAAACACTGATGCCTCCTAGTGCAACTCCAAATAGAGCAGAAACAGTCACCTcgacaaaaagaaagacttgCCACTGTTGCACTGTCATGTAAGCAAGCATTCAAACAGAAAGCTCATGTTTTCTCTTTCGTTCTCTCTTTTATTAGATTTCCTGTCTTAGATTCTCTATTTCATTGCTCACTCTGAATTGTAGTATATGAGTACAGTTTTCTTCCATCTGCATTAATAGATATAAAGTGTTGGGAGGCAAATATCACAAATATCTGAGTAACCCTTATCAGTTATCATTGTTGCCCCCTGCTGGACAGATTTTTTGTAATGAAAGATGATTTATAAAGGAGACAAATAGGATTATCCTGCCTCGTGCCCattgttcctggaataggctctggatccaccgtgatcctgaccaggataaagtggttactgaagatgaatgaatgacaaatAGGGTTGTGTTGCCTAATTGATTTTATGTCATATCCTgtcatttctattttaaatgaagttaTTGATATTTGTatgaacatatataaatatcatatataCTTGATTTATCATGtgtggtataaaaatatatttgatttgttaGGCTGAAGTGGAGTATGACGAAGCACATTTATGCCTAATCCTAAAACAATGTGTGTTAGCAAACAAATACTAGTATTATGCAACAAACATTATGCAATGTGACATGAGATATAAAGATTATGTGCAAAGTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00140 Steroid hormone biosynthesis
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249332 lncRNA downstream 69784 13171841 ~ 13172066 (-) True G210461
TU249304 lncRNA downstream 146113 13095520 ~ 13095737 (-) True G210436
TU249303 lncRNA downstream 146373 13095244 ~ 13095477 (-) True G210435
TU249295 lncRNA downstream 162905 13077999 ~ 13078945 (-) True G210427
TU249275 lncRNA downstream 206998 13034128 ~ 13034852 (-) True G210412
TU249463 lncRNA upstream 42359 13310533 ~ 13354585 (-) True G210570
XR_003402958.2 lncRNA upstream 101280 13369454 ~ 13372938 (-) True LOC113528601
TU249469 lncRNA upstream 122442 13390616 ~ 13395410 (-) False elof1
TU249504 lncRNA upstream 136965 13405139 ~ 13405357 (-) True G210607
TU249543 lncRNA upstream 177562 13445736 ~ 13446438 (-) True G210640
XM_026917090.2 mRNA downstream 14975 13223244 ~ 13226875 (-) True nfil3-6
XM_026916922.2 mRNA downstream 21828 13210369 ~ 13220022 (-) False nfil3-2
XM_026916923.2 mRNA downstream 22777 13210369 ~ 13219073 (-) True nfil3-2
XM_026917298.2 mRNA downstream 137012 13096910 ~ 13104838 (-) False gcdhb
XM_026917297.2 mRNA downstream 137021 13096259 ~ 13104829 (-) True gcdhb
XM_026916221.2 mRNA upstream 122442 13390616 ~ 13395457 (-) True elof1
XM_026917009.2 mRNA upstream 164053 13432227 ~ 13435356 (-) True swsap1
XM_026916843.2 mRNA upstream 226812 13494986 ~ 13498163 (-) True gadd45gip1
XM_026916077.2 mRNA upstream 393989 13662163 ~ 13669491 (-) True nme4
XM_026916672.2 mRNA upstream 402735 13670909 ~ 13695259 (-) True xpo6
trnas-aga_12 other downstream 415311 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579428.1 other downstream 682637 12548829 ~ 12559213 (-) False tom1
XR_004579330.1 other upstream 127292 13395466 ~ 13399225 (-) True LOC117598755
XR_003402937.2 other upstream 735995 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 752074 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 1219647 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 1252103 14520277 ~ 14520975 (-) True G211151

Expression Profile