Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026917205.2 |
| length | 661 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 5 |
| gene id | rps11 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 5089263 ~ 5091817 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02949 | RP-S11e, RPS11; small subunit ribosomal protein S11e |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU243315 | lncRNA | upstream | 8059 | 5079987 ~ 5081204 (+) | True | G205454 |
| TU243310 | lncRNA | upstream | 74747 | 5003626 ~ 5014516 (+) | True | gosr2 |
| TU243292 | lncRNA | upstream | 91467 | 4936564 ~ 4997796 (+) | True | G205436 |
| TU243290 | lncRNA | upstream | 133905 | 4894540 ~ 4955358 (+) | False | G205436 |
| XR_004579387.1 | lncRNA | upstream | 163581 | 4923914 ~ 4925682 (+) | True | LOC117598842 |
| TU244073 | lncRNA | downstream | 537641 | 5629458 ~ 5629659 (+) | True | G206157 |
| TU244143 | lncRNA | downstream | 643553 | 5735370 ~ 5735607 (+) | True | G206212 |
| TU244156 | lncRNA | downstream | 663035 | 5754852 ~ 5756939 (+) | True | G206221 |
| XR_004579445.1 | lncRNA | downstream | 777045 | 5868862 ~ 5869806 (+) | True | LOC117599005 |
| TU244231 | lncRNA | downstream | 805568 | 5897385 ~ 5898200 (+) | False | tmem98 |
| XM_026916708.2 | mRNA | upstream | 10893 | 5057922 ~ 5078370 (+) | False | map3k14a |
| XM_026916709.2 | mRNA | upstream | 10893 | 5065369 ~ 5078370 (+) | True | map3k14a |
| XM_026916876.2 | mRNA | upstream | 78226 | 5003548 ~ 5011037 (+) | False | gosr2 |
| XM_026916160.2 | mRNA | upstream | 98012 | 4982026 ~ 4991251 (+) | True | wnt9b |
| XM_026917196.2 | mRNA | upstream | 114433 | 4970822 ~ 4974830 (+) | True | LOC113528572 |
| XM_026916179.2 | mRNA | downstream | 4505 | 5096322 ~ 5103874 (+) | True | hrob |
| XM_026916897.2 | mRNA | downstream | 16604 | 5108421 ~ 5626980 (+) | False | asic2 |
| XM_034310193.1 | mRNA | downstream | 23362 | 5115179 ~ 5626980 (+) | False | asic2 |
| XM_026916896.2 | mRNA | downstream | 403140 | 5494957 ~ 5626980 (+) | True | asic2 |
| XM_026917073.2 | mRNA | downstream | 696904 | 5788721 ~ 5824200 (+) | True | kcnj19a |
| XR_003402913.2 | other | upstream | 367795 | 4712873 ~ 4721468 (+) | True | psmc3ip |
| TU242671 | other | upstream | 1102979 | 3966758 ~ 3986284 (+) | False | limd2 |
| TU244082 | other | downstream | 565795 | 5657612 ~ 5660848 (+) | True | G206166 |
| TU244359 | other | downstream | 1038966 | 6130783 ~ 6134571 (+) | True | si:ch211-198p11.6 |
| TU244360 | other | downstream | 1038966 | 6130783 ~ 6134571 (+) | False | si:ch211-198p11.6 |
| XR_004579365.1 | other | downstream | 1068517 | 6160334 ~ 6175366 (+) | False | mapk3 |
| TU244376 | other | downstream | 1098348 | 6190165 ~ 6194964 (+) | True | ypel3 |
