RNA id: XM_034310290.1


Basic Information

Item Value
RNA id XM_034310290.1
length 1957
RNA type mRNA
GC content 0.50
exon number 15
gene id ttyh2l
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11154915 ~ 11191515 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGCTTCACAACTTCCCACAcgttaattttcatttccaagcAGTTGATAGTGCCTTTAAACCGGGGGAAGTAAACTACCAGCAGGGTGTAGTAACTCAGATGTCACAAGACTGGAGAACTGTTTTACTTCGCTCATGTTATCACATGACTCTCTATTCTGAGTGATCCTCTGATAATTTCTCATTTGCCTCAGTCCATATGGGTTTCCACGATATTGTGCAATCTCTGATCTTTCTGGCCTGCATGGCAGCAATGGGCCTGGGCTTGAGCCTGTTGCTGCTGGGCATCTATTTAAGCTGCCTGTGCTTCTGGCGTAGGGAAGAGGCCGAGGAGACCAAGAGGCCCGACACTTGCTGCATCACGTGGGCTGCCGTGATCACGGGCCTGGTCATATGttctGCAGTGGGAGTGGGTTTCTATGGAAACAGCGAAACCAACGATGGCGTCTACCAAATGACCTATTCACTCTATAACACCAATCACACTTTGGCTGGCATCGATAGCCAGGTGGCCGGCTCTTTGAGCAACATGCAGTTACGGCTAAAGGAACACCTGGCACGGCTGGATGAGATCTTTTCGCCTCGGCAGGACTACACCCAGACACTTCGCTTCATGCAGCAGATGGCTGACAATATCATCCGACAGCTCACTGCCATGCCCAACATCAGCCAGGCCAGACAGGACCTTGCAACAGTCGCTGATCAGGCCAGCTACATGGAGTACTACAGATGGCTGATGTATCTCCTGCTGCTCATTCTAGACCTGGTCATCTGTCTGGGATGCTGTTTGGGGCTGGCAAAGCATTCTCGCTGGCTTCTCACTCTtaTTATGGCGTTAGGTATGCTGACTCTTATACTGAGCTGGGCATCACTTGGAGTGGGCACAGCCACTGCAGTGGGTGCCAGTGACTTTTGTGTGGCCCCTGACAAATTTATTGTGAATCAAACAAAGGACTTCCTGAGTGAAGATGTAGCCCATTACTACCTTTACTGCAGCCAGACTCTACCCAATCCTTTTCAGCAGTCACTGACCATCTTCCAGAGGTCCCTGACAACCATGCAGATTCAGGTCCAAGGCTTGCtacatgtttctctctctatcttcccCACTGCTGAGaGGGATTTGTTGGGCATTCAAGGCCTCCTGAACACCACAGAAGTCAGCTTGCACCAGCTCACAGCCTCGCTGGACTGCCGCAGTCTTCATAAGGACTATCTGGATGCCCTGGTGGGCTTGTGCTATGATGGAGTGGAGGGCCTACTCTACCTCTGCCTCTTCTCCCTGCTAGCAGCCTGCGCCTTCTGCGCTATGCTTTGCACCATTCCACGAGCATTTATTCTCATAGCCAGCAGGGACAGGAACTATGACGACATAGACGAAGAGGACCCATTTAACCCACAGTCACGGCGCATGGCCCCGTACAACACAAGCCGCACAAACGTGCACAGCTTCTGCAGCTACAGCAGCAGCCTGGGCAGCCAGAGCAGCCTGCAGCCACCGCCGCCAGCCACCTCCACCGCCCCCCCTCCAGAGTACATGAATCAGTCGATGCTGTTTGCCGGAAATCCTCGATATGAAAATGTACCGCTGATTGGAAGAGGTTCACCACCACCCTCGTATTCACCCAGCATGAGGACCACCTACCTGTCTATGACTGATGCCCAGACGCGACATTTTGGAAGTGACTACCAGGTGTAAAGTGTGAGTGTCTGAACCCTGAAGGAGCCGAAACCATGATGAAACCAAATAGATGATATTTAAATCAGACTTTTATCTCTGTGGATACATTTTTCCCCGTTCTCCATATTGAGGAATTCAAGATCTGCAGTACAGTATTTTGACTCCACGCAGAAATCTCTCCAAAGAGGAGGCCTTACAGGCTAACAGCATACATCAACCACCATGTAAATACAACTTTTTGGTCAGTACAGGAAAATATACAAACTGTGagatgtt

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247803 lncRNA downstream 9931 11089013 ~ 11144984 (-) True G209189
TU247589 lncRNA downstream 520765 10633535 ~ 10634150 (-) True G208998
TU247571 lncRNA downstream 635968 10518342 ~ 10518947 (-) True G208980
TU247554 lncRNA downstream 704375 10447736 ~ 10450540 (-) True G208964
TU247529 lncRNA downstream 812693 10341911 ~ 10342222 (-) True G208951
XR_003402938.2 lncRNA upstream 27425 11218659 ~ 11221378 (-) True LOC113528410
TU248077 lncRNA upstream 27434 11218668 ~ 11221366 (-) False LOC113528410
TU248181 lncRNA upstream 197726 11388960 ~ 11389231 (-) True G209529
TU248190 lncRNA upstream 209488 11400722 ~ 11401423 (-) True G209538
TU248193 lncRNA upstream 211844 11403078 ~ 11405775 (-) True G209541
XM_026916804.2 mRNA downstream 2752 11147394 ~ 11152163 (-) True LOC113528317
XM_034310021.1 mRNA downstream 9083 11078461 ~ 11145832 (-) False baiap2a
XM_026916567.2 mRNA downstream 9085 11078461 ~ 11145830 (-) False baiap2a
XM_026916570.2 mRNA downstream 9087 11074517 ~ 11145828 (-) False baiap2a
XM_026916043.2 mRNA upstream 235051 11426285 ~ 11438335 (-) True hs3st3b1a
XM_026916453.2 mRNA upstream 302041 11493275 ~ 11495487 (-) True LOC113528102
XM_026916933.2 mRNA upstream 318497 11509731 ~ 11518087 (-) True LOC113528402
XM_026917058.2 mRNA upstream 329532 11520766 ~ 11529442 (-) True slc16a5b
XM_026916692.2 mRNA upstream 450923 11642157 ~ 11645770 (-) False hmox1a
XR_003402902.2 other downstream 684397 10451496 ~ 10470518 (-) False tecpr1b
trnac-gca_22 other downstream 769795 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 1423665 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 1680437 9466480 ~ 9474478 (-) False copz2
TU246804 other downstream 1735331 9413601 ~ 9419584 (-) True prr15la
XR_003402978.2 other upstream 241276 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 345326 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 374776 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 508672 11699906 ~ 11701101 (-) False zgc:162612
XR_003402968.1 other upstream 564591 11755825 ~ 11755923 (-) True LOC113528652

Expression Profile