RNA id: XM_026917213.2


Basic Information

Item Value
RNA id XM_026917213.2
length 2457
RNA type mRNA
GC content 0.46
exon number 3
gene id ptger1b
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13028820 ~ 13042306 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGAAGTACTCTTTTACTCAGTATTTTGACGGTTAGATAAGTGCTGTTAGTGGATGTGAAACGCCACTGTTCAGTAGTGTGCTTCTGCTCCGCTCAGTATAAAAGCGCTGGAGCTCTTGCAGCTGCAGCTCGTTGGAGAGCGCGCGCGGCTGGAGCACGAGCGCTGCGGAGAACCCACTCTGTTCTACTACAGCTGTGTTTTTCCTTGAGATTCATCAGTACTCTCTCATTGTGGAGATGTTATGCCTGCATCATTGCAACTTCTCAGGGCCCAGTGCCATATCACCCCTCCCCAATCAGACCCAGGCTGTGGTGGAAGTGGCAGCCGTGGGTCATAGGGACAACCTGACAAACAGAGCACATAACAACCCTGCGGCCGCTGGCCTTTCCATGACCCTGGGTGTCCTGTCCAACATCGTAGCACTTTTCATCTTGGCCAAGGCATATGCCCGACTGCGCAGACGCTCAAAGGCCACCTTTCTTCTCTTCGCCAGCTCGCTGGTGGCCACGGACTTGGCTGGTCATATCATCCCTGGTGCTGTGGTGCTACGCTTCTACTCGAACGGCGTAGGGACGAGTCCTCCCACCCATGCTGATGCCACCTGCCAGTTCCTAGGTGGCAGCATGGTCTTCTTCGGCCTGTGTCCACTTTTTCTGGGCAGCGCCATGGCAGCTGAGCGGTGCCTGGGTGTCACACAGCCACTTCTCCATGCTCGTCTTGTCTCTGGGACTCGCACCAAGATGGCCTTGGTGCTAATCTGGCTGGCAGCACTTGCTGTGGCCTTGCTGCCTGCTGTAAGGCTGGGAGAATACACCTATCAGCACCCATGGACCTGGTGTTTTATAAGGGTATTAGGGGAAGTTACGGACTCAGATTTTGCCTTCATGCTGTTATTCTCGGCACTTGGATTGGGCTCATTGGCCATGTCCTTGGTGTGCAACACGGTTAGCGGCATCACCCTGGTGCGTGCACGCCTGCGCAGAAGGAAATGCCACCGTAGGACAGCAAAATCGCATGACATAGAGATGGTGGCGCAGCTCCTGGGAATCATGATCACTTCCTGTATTTGCTGGAGCCCCCTGCTGATCTTTGGCTTGATGTCAGTCACAAATCGCCACAATGGCTCCCGGGAGGAAGACATGTACTATAAGAAACTGATGGTGATGGGGGTACGTCTGGCCTCGTGTAACCAGATCCTGGACCCGTGGGTTTACATCTTGCTGCGGCGAGCGGTCCTCAGAAAGATCTATCAGCTCACCACTGGCCGCACTGATATGAGAGGCAGCACTTTCCGCCGCTGGGAGATCAGCTCCTTACAGAGCTCTGAGAAAAACACCATCAAACGGATCTAACAGAGATGATGAAAAGAAGAGGGTGGAGACAGTGGAGAGAATCTGGATACTTTTTCTGTGCTCTATAGTGCCTTGCAGTGTATGTGCCGTGTGCTAGTACCCAAGGCAGATGAAGGAAGAACATACAGAAGCTAAGGGCGGTGGTTGCTGTGTAGTTTTGTTCTAAGGACTGCACGATTTTGAGTTCAAATCACAGGACTGCcactgagagagacagttaATTTGCAACTGCTCTGCTAAATCACTTTGGATAAATGGAAATGGTGATCCAGGTTGTGCCAACAATTTAGTCTTATTGGTTCCTCACCTTAATGACTTTTCAATCCTTTTACCATAGAGACCATTGCTGGTCTCAACAAATGTGAATAATTTTGATTTTATGGACCTGGATTCATATGCTCTACATGTCCCTTCATTATTGGCTAATGTATAAAAGAGGACATGATAAGGGACACTGATTGGCTACTAACAGCATAACAGTGGAGGTTTGCAGAATACCTGCCTTAGAGATACTTAATATAAAGTTAATATCATATATGCTTTATAAAATTCATTATAGAATAAATGAAACTTGACTGGATCTGGGGCATATAAAGGATAAAACCATCCAAACACCTTCTTTTCTTAAAAATCCACAGATATCTGCATTTTTACCGCATACTCCACATGGATTCACATGGATATCGGGAAGCTTAACAGAATGTTCACGCTATGTTGGAAGTTGTTTGTGTCTTTCAAGGtctaaatattgtaaatattccATTAGGGACTCAAAGTAATGGCAGAGCTTTTACTTGAATTGTATTCATAGTGAGATGTTCttatgtctgtatttattgtctgtttGGTTTCCCTAATTATGTGACCTGAAAGTAATCTAAATTGTATAAAATCTATTGAATGTAATAAATTGTGTcatgttgcttttttgtttcatgCATCAGCGTGAAATGTACTAATCACATGTGCGCAAACATCAAGTAATCCTTCCAGGCAGTAAAATTAATGGAAAATACTTTGATGAGAGTGACATAGTTCTGCAGTTACCTAATGTGGTCTGTTCTGATTTTTTAACTGCTTGTGCAATCGCATGGATAATTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249018 lncRNA upstream 212878 12821076 ~ 12821284 (+) True G210209
TU248969 lncRNA upstream 254026 12779249 ~ 12780136 (+) True G210160
TU248885 lncRNA upstream 485659 12546433 ~ 12548503 (+) True G210086
TU248698 lncRNA upstream 653176 12378946 ~ 12380986 (+) True G209945
TU248695 lncRNA upstream 655749 12378159 ~ 12378413 (+) True G209944
TU249234 lncRNA downstream 2692 13044990 ~ 13045833 (+) True G210384
TU249423 lncRNA downstream 323386 13365684 ~ 13365893 (+) True G210532
TU249525 lncRNA downstream 402450 13444748 ~ 13445227 (+) False znf653
TU249558 lncRNA downstream 417681 13459979 ~ 13460490 (+) True G210655
TU249616 lncRNA downstream 619876 13662174 ~ 13663501 (+) True G210698
XM_026916390.2 mRNA upstream 70388 12939770 ~ 12963774 (+) True si:ch211-194b1.1
XM_034309990.1 mRNA upstream 70388 12939770 ~ 12963774 (+) False si:ch211-194b1.1
XM_034309991.1 mRNA upstream 70388 12939770 ~ 12963774 (+) False si:ch211-194b1.1
XM_026916391.2 mRNA upstream 70388 12939770 ~ 12963774 (+) False si:ch211-194b1.1
XM_026916467.2 mRNA upstream 99140 12930220 ~ 12935022 (+) True pglyrp6
XM_026916004.2 mRNA downstream 23453 13065751 ~ 13078673 (+) True farsa
XM_034310172.1 mRNA downstream 40768 13083066 ~ 13094679 (+) True syce2
XM_034310173.1 mRNA downstream 40781 13083079 ~ 13094679 (+) False syce2
XM_034310174.1 mRNA downstream 40783 13083081 ~ 13094679 (+) False syce2
XM_034310171.1 mRNA downstream 40836 13083134 ~ 13094680 (+) False syce2
XR_003402925.2 other upstream 845573 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 1456339 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 1496997 11537047 ~ 11537165 (+) True LOC113528662
TU247338 other upstream 2616281 10372415 ~ 10417881 (+) False G208781
XR_004579399.1 other downstream 433530 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 2770944 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 2875919 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 3098032 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 4044993 17087291 ~ 17109275 (+) False srl

Expression Profile