RNA id: XM_026917219.2


Basic Information

Item Value
RNA id XM_026917219.2
length 3302
RNA type mRNA
GC content 0.45
exon number 8
gene id nr1d1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9896866 ~ 9904394 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCGATCCAAGAGAACGTAACAGCTTTTTCTCTCCACCTTCTGTTGCCATGGATGCATAGATAACAAACGGCGGAAGATATGTATCTTTACGTCGGTAGCTTGCCTTATTTCATAACAACATGCCACTCTTCATGTAATTGGCAGTCACAATGACgttttttgttaaaatacaaatttttaacAGAATTTCAAATTCTGTTCCATGTCTAAAAAGATATTTCCTTGGATCAGAAAGACTGTTTCATAACATTGCGCTTTTCATAACGCATTCACGTGTTAAACcgaataataattaatatatgtgAGATTCGGAGGTAATGCGGGATACAGAGGCTACTTAAGAAACTTAAAGCtctttaaaaatgcagtgtgaGACTGATGGCTCTCATGTGGAAGGCGGATCCGCAGACGATGATTCGGTCTCGTTGTGCAGCCGTGTGTCTGAGACGCGCACGTGGCACGGCGGTGTGCTCGGATGATGCTCAAAGCACATTACACGCATGCGCGTTGCGGCCACGGGTTTTTCCTGAAGTGTCGCTCCGTCAAGGAGGAGTAATCTCTTACATCGGATCATGTGGAGGGTCTCCTAACCGCACCAGCCCAGTATCCATGTACAGCGAGAATTCCAATTGCAGTCTGCAGTCATTGACACAGCCGTGCTTTGGGTCATCTTTCCCACCTTCACCTAACGGTTCCCATGATTCTTCACGTATGTACACCAGCAGCAGTAGCTCCAGCAGTTCAGCATGTGGTGAAGACGGTAGCTCATCAAGCTCAGGAGGATCCCCAAGGGGGCGTGATGAAAGCAACGTTATATACAACTCACCAAACAAATCAGTTGCTACTCTTACAAagCTAAATGGAATGGTCTTACTCTGCAAAGTCTGTGGAGATGTGGCATCAGGCTTTCATTATGGTGTCCATGCCTGTGAAGGCTGCAAGGGGTTCTTCCGTCGGAGCATCCAGCAGAACATCCAGTACAAAAAGTGCCTGAAGAATGAAACCTGTACTATTATGAGGATTAACCGCAATCGGTGCCAGCAGTGCCGTTTCAAGAAGTGTTTGTCTGTTGGCATGTCTCGTGATGCTGTCCGTTTTGGTCGCATCCCGAAACGTGAAAAACAGCGCATGCTAGCTGAAATGCAGAGCGCCATGAATAACATGGTGAACAACCAGCTGCAGAATGAATTCCAACTGGCTACTCTCAATACCAGCACTTCAttctcttcatcatcatcctcatcgtCCTCATCTCCCTGCCCAGGTCTGACAATTGCTTCTCAGCCCCAGCCTTCTGCTGTGCCTGTAGCTCCTTCCCCCTCTCCACCAGCTCCAGCATCACCTTCTGCTGAAACTGCTCAGAGCCCTCCTCGGATTGCCACTTCTCCACCACTGTGCCCTAGTCCTGGCCTGGACAGCACCATCACCGCCATTACCAGAGCTCATCGTGAGACCTTTGTCTATGCTCACGATAAGCTAAGTGCAGCACTACAGCCTCAAAATGGGGTTGATCTGGATGGCCACAACAGTAATTACTTTGCTTCTGGCTACAATATGAATAGCCACAATTCAATATATCCATCTAATGCAGCTCTACAGTGCAATAGCTTCAACCCTGATAACAAACAACACCTTCAATCCTTACCAGACTCTAACCAGCAGCATCAGAGGCTGCCACAGCAAAACAATGAGCAACACATCCCCAACAGCAGCTGGTATGGGGCTGAGCAGGGTAAAGGGAACAGCAACAATATCCCGGTGCAAAACTGCCCATGGAAGAACCGCAAGGACATTCTGCTGGCTTGTCCAATGAACATGCATCCTCAGGCAGATCCTAACAAGACACCACAAGAGATTTGGGAAGATTTCTCCCTGAGCTTCACACCAGCTGTGCGTGAGGTAGTGGAGTTTGCCAAGCATATCCCAGGTTTCAGCTCTCTGTCCCAAAACGATCAGATCACCTTACTGAAAGCAGGCACCTTTGAGGTGCTGATGGTACGTTTTGCATCCTTGTTTAATGTCAAGGAGAAGACTGTCACATTTATTTCTGGCACCACCTACAGCCTAGAAGCTTTGAAGAGCATGGGAATGGGAACCCTGTTGGGAACCATGTTTGACTTCAGTGAGAAACTCAGTGCACTAGAGCTCTCTGCAGAGGAACTGGGTCTTTTTACTGCTGTGGTGCTGGTTTCTACAGATCGCTCTGGTATAGAAAATGTAAAGTCGGTGGAGATGCTCCAGGACAGCCTGATTAAAGCCCTTCGTACATTGGTCAGCAAGAGCGCCCCTGGTGATGTCTCTCGTTTCACCAAGCTGCTGCTCAAACTGCCAGATCTGCGCACCCTTAACAACATGCACTCTGAGAAGCTTCTCTCCTTCCGCATTGATGCATGAGAAGCCTTTGGCAGCTGTTAGGTATTGGAGGGTTTAACTGAAGGTTTTACAAACTTACCATTGCTGCTCCACCAGCATATGCTTGGCTCTGATGGTGCTCAAAGACTTGAACAATGATTACAGGTTTGAAGGGACACACAAGCACTAAGTGCATCAGAACATTGACAtgaccatatttttttttaaagtttctttGCATCAcatcaaattaaaattcaaGTACTGTAACCACAATGACCTTGATGTTTTAAATTCTTAAACTGAAGGACATGATATGGCATGGACACAGTGTCCCAATTTAAACCTTGCATTTACATGAAATCAGCTGGTAGCATTGCCACATCGCAGCTCCAgtgtccctggttcaatccagttttgcatattctcccAATGTCCTCATGCAAACACACTGTATAGTGTCTCTGGAGGTTGCATGGCTGATCCACATGTTAATGCAATGGATAAATGGAGCCAAAGCCTCAAACAATCTTGAACTTCCAGTCTGCTGGAGTCCAGTCCATGGGAATCATAACCAGAGAGCTGGGATGAAGGAGAATAGAGGCAGACAGAACAGTACTTTGTTACTGCAGTCTGAATTGGGTTCCTCCAAGAGGCTACAATACACATAAAAtcccatatttaaaaaatggaccaGATCAATAATGCAAAGGACAAACAAGTCATGCAAGGGATCTTAGCCCATTTCTGCTGAAGTCCTTGCCACTTTGtaaaaatttgtaaatataaatctatactTACTTGAAATGttctaaaatgtatatattctaTACATAAATCTATTTTTTGTAAAGTGTAATTGCTCAGTGTAAAGCTATATATGACAAATATATAAGATGTCAAGTGTAGTTAGATCTCATTTACAGCATAAAGACTTACTCTaaaaca

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08531 NR1D2; nuclear receptor subfamily 1 group D member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247084 lncRNA downstream 13669 9858759 ~ 9883197 (-) False LOC117599011
XR_004579453.1 lncRNA downstream 52445 9829627 ~ 9844421 (-) False LOC117599011
TU247137 lncRNA upstream 11654 9914907 ~ 9917529 (-) True G208613
TU247174 lncRNA upstream 160724 10063977 ~ 10066356 (-) True G208649
TU247295 lncRNA upstream 283783 10187036 ~ 10187252 (-) True G208758
TU247314 lncRNA upstream 318457 10221710 ~ 10290885 (-) True G208771
TU247529 lncRNA upstream 438658 10341911 ~ 10342222 (-) True G208951
XM_026916217.2 mRNA downstream 126948 9767867 ~ 9769918 (-) True hoxb13a
XM_026916726.2 mRNA downstream 155533 9737003 ~ 9741333 (-) True hoxb9a
XM_026916728.2 mRNA downstream 164300 9729851 ~ 9732566 (-) False hoxb8a
XM_026916727.2 mRNA downstream 164300 9729851 ~ 9732566 (-) True hoxb8a
XM_026916032.2 mRNA downstream 168012 9724361 ~ 9728854 (-) True hoxb7a
XM_026916517.2 mRNA upstream 84863 9988116 ~ 10033085 (-) True ppp1r9ba
XM_026916760.2 mRNA upstream 138928 10042181 ~ 10061921 (-) False col1a1a
XM_026916761.2 mRNA upstream 138928 10042181 ~ 10061921 (-) False col1a1a
XM_026916759.2 mRNA upstream 138928 10042181 ~ 10061921 (-) True col1a1a
XM_026917099.2 mRNA upstream 219133 10122386 ~ 10134023 (-) True nags
XR_004579397.1 other downstream 165616 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 422388 9466480 ~ 9474478 (-) False copz2
TU246803 other downstream 477282 9409804 ~ 9419584 (-) False prr15la
trnac-gca_22 other upstream 481796 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 548243 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1529257 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1633307 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 1662757 11566010 ~ 11566128 (-) True LOC113528658

Expression Profile