RNA id: XM_026917230.2


Basic Information

Item Value
RNA id XM_026917230.2
length 1822
RNA type mRNA
GC content 0.54
exon number 16
gene id carm1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18802031 ~ 18818309 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGGCCCGTGTTCTCCGCGCGGTTGGATGTGGCGCGCGCTACTGCGAGCTGCTGTCTCTCTGCGCGAGCTCGAAGATGGCGGTGTCCGTGTTTCCCGGCGTGCGGCTCCTCTCTATCGGGGACGCCAACGGAGACATCCAGCGGCATTCCGAGCAGCAGCCCCTGCGGCTGGAGGTGAAGACCACGCCGGACGCGGCGCTTCTAAACCTCTCGAACAATGAGGAGGCGAGCGTGTTTAAGTGTTCAGTGTCACGGGAGACGGAGTGCAGTCGTGTGGGGAAGCAGTCCTTCATCATAACACTGGGCTGTAATAGTGTGCTTCTGCAGTTCGCCTCCCCCACAGATTTCTCCTCATTCTACAATCTGCTGAAGAACTGTCGTGGCCATGTGAATGAGCACTCAGTGTTCAGCGAGAGGACGGAAGAGTCATCGGCTGTACAGTACTTTCAGTTCTATGGCTATCTTTCTCAGCAGCAGAACATGATGCAGGACTATGTTAGAACTGGAACTTATCAACGGGCCATTCTCCAGAACCATACCGACTTCAAGGACAAGGTGGTGTTGGACGTGGGATGTGGCTCAGGGATCCTGTCGTTTTTTGCAGCTCAGGCTGGTGCGCGTAAAGTGTATGCTGTGGAGGCCAGCACCATGGCTCAGCACGCAGAGGTTTTGGTGAACAGTAACAGGTTGACGGAGCGTGTGGTAGTAATCCCAGGAAAGGTAGAGGAGGTCACCCTACCTGAGCAGGTGGACATCATCATCTCCGAACCCATGGGCTATATGCTGTTTAATGAGAGGATGCTGGAGAGCTACTTGCATGCCAAGAAATTCCTCAAACCAAATGgtaAAATGTTCCCCACCATTGGCGATGTCCACCTCGCTCCTTTCACAGACGAGCAGCTCTACATGGAGCAGTTCACCAAAGCCAACTTCTGgtACCAGCCATCTTTCCATGGGGTGGATCTGTCTGCACTGAGGGGAGCTGCTGTAGACGAGTACTTCAGACAGCCGATTGTGGACACGTTTGACATCCGAATCTTGATGGCCAAATCTGTGAAATACACAGTTAACTTTTTAGAAGCTAAAGAGGAGGACCTTTATAAGATAGAGATCCCCTTTAAGTTCCACATGATGCACTCAGGGTTGGTGCACGGCCTGGCTTTCTGGTTTGATGTTGCATTTATGGGATCTGTGATGACAGTGTGGCTCTCCACGGCACCCACTGAGCCCCTGACTCATTGGTATCAGGTGCGCTGTCTCCTGCAGTCGCCACTCTTCGCCAAAGCGGGAGACACCATGTCGGGCACGGCCCTGCTCATCGCCAACAAGAGGCAAAGCTATGACATCAGTATTGTTGCTCAAGTTGATCAGACTGGCTCCAAGTCCAGCAACCTCCTGGATCTGAAGAACCCCTTTTTCAGaTACACAGGCACCACCCCTAACCCTCCTCCCGGCTCACACTACACCTCCCCCTCTGAGAACATGTGGAACACTGGGGGGGCCTATAGCATGAGCCAAGGCATGGCTGTGtcaggAATGCCAGCAGCTTATGACCTCAGCACTGTCATCGGTGGCAGTGGCTCTACAGTTTCCCACAACAACCTCATCCCCCTTGTGAACACGGGGATTGTGAACCACACTCACTCCAGAATGGGCTCGATCATGAGCACAGGAATTGTCCAGGgagCTACAACCCAGCAGGGTCCGACCAGCACCAGCACCCACTATCCCGTCACTAACCAGTTCACCATGGGCGGTCCTGCCATCTCAATGGCCTCACCTATGGCCATCCCCAGCAACACGATGCATTATGGGAGCTAA

Function

GO:

id name namespace
GO:0048742 regulation of skeletal muscle fiber development biological_process
GO:0006479 protein methylation biological_process
GO:0009405 pathogenesis biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579422.1 lncRNA downstream 426224 18375684 ~ 18377255 (-) True LOC117598999
XR_004579431.1 lncRNA downstream 727092 18070785 ~ 18076387 (-) True LOC117599003
TU252323 lncRNA downstream 749264 18050735 ~ 18054215 (-) False mettl23
TU252320 lncRNA downstream 749264 18050833 ~ 18054215 (-) True mettl23
TU252315 lncRNA downstream 760200 18041404 ~ 18043279 (-) True G213028
TU252741 lncRNA upstream 5162 18823471 ~ 18827432 (-) True si:dkey-204f11.64
TU252898 lncRNA upstream 205449 19023758 ~ 19031157 (-) True G213549
TU252899 lncRNA upstream 206763 19025072 ~ 19072985 (-) False G213549
TU253100 lncRNA upstream 598875 19417184 ~ 19422415 (-) True G213716
TU253270 lncRNA upstream 845028 19663337 ~ 19663762 (-) True G213879
XM_026916191.2 mRNA downstream 10520 18790181 ~ 18792959 (-) True timm29
XM_026915999.2 mRNA downstream 46803 18735653 ~ 18756676 (-) True slc25a23b
XM_026916637.2 mRNA downstream 83145 18711080 ~ 18720334 (-) False znf207a
XM_026916137.2 mRNA upstream 5583 18823892 ~ 18827734 (-) False si:dkey-204f11.64
XM_026916886.2 mRNA upstream 17884 18836193 ~ 18843733 (-) True aldh3b1
XM_034309992.1 mRNA upstream 17884 18836193 ~ 18843313 (-) False aldh3b1
XM_026917128.2 mRNA upstream 33147 18851456 ~ 18872146 (-) True gna13b
XM_026916703.2 mRNA upstream 84354 18902663 ~ 18915773 (-) True cog1
TU252457 other downstream 426116 18376077 ~ 18377363 (-) False LOC117598999
TU252076 other downstream 949840 17828167 ~ 17853639 (-) True tsen54
TU252009 other downstream 1128195 17674827 ~ 17675284 (-) True G212750
TU251953 other downstream 1377578 17386211 ~ 17425901 (-) True G212700
XR_004579436.1 other downstream 1483760 17292851 ~ 17319719 (-) True LOC113528519
trnat-cgu_6 other upstream 257960 19076269 ~ 19076340 (-) True trnat-cgu_6
TU253095 other upstream 626680 19444989 ~ 19448334 (-) False rbbp6
TU253598 other upstream 1222114 20040423 ~ 20063490 (-) False slc2a9l2
trnal-aag_9 other upstream 1594540 20412849 ~ 20412930 (-) True trnal-aag_9
TU254170 other upstream 2196130 21014439 ~ 21027259 (-) True fgf2

Expression Profile