RNA id: XM_026917234.2


Basic Information

Item Value
RNA id XM_026917234.2
length 2317
RNA type mRNA
GC content 0.44
exon number 6
gene id cacng3b
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19471684 ~ 19504307 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggatggatggatggatggacgtaTAAATTCTCCGTGTGTTTGTCTCTTTTGGCCTTCCATATCAGAGCGCTCCTAAAGCCGCTCATCCTTCTGTAGAGTCACATTTgaggagcagcagcagaacAGAAACATCATCATTGCTAAGCTAGTGCTGAGGTGAATATCAGTAAAGCGTTTATGATCGGCTTTTTCCCCCTCACCTGAGGGAAACATGGCAGCGCGGGAAAATGCCACGGATATCATTTCTCAGGCTGAGACTCGACAGGAAAACGGCTGCTTTCGTCGGGGGAAAGAGAATTTCTTCCTGGATTAACAAAGTGAAGgacaattttattcattaatacatattttcatttcattgttaGCCGATTTTAGCCGAGCTTCAGCACAGAAAACAGCAAAAGAGCAGCTTGGAGACATTTTGAAGCATTTCTGATGCGCTGAGGTCCTGAGGAAAAAAAtTTTGCATGCCGAGAGATGCTGCTGTGTGACCGAGGCGTGCAGATGCTCATCACTACAGTGGGCGCTTTTGCCGCCTTCAGCCTCATGACCAtcgcagtgggcacagactacTGGCTTTACTCCAGAGGAGTGTGTAAAACCAAAGCCAACCATGAAAACGAAACGAGCAGGAAAAACGAGGAAGTGATGACCCACTCCGGATTGTGGAGAACCTGCTGCCTGGAAGgGACATTTCGTGGGGTGTGTAAGAAGATTGATCACTTTCCTGAGGATGCTGATTATAAACAGGACACAGCTGAGTATTTACTGCGTGCACTCCGAGCCTCCAGTGTGTTTCCGATCATGAGTGTGGGTTTATTGTTTATGGGTGGATTGTGTGTAGCAGCGAGCGAGTTTTACAGGAGCAAACACAATGTCATCCTCAGTGCCGGAATATTCTTCGTCTCTGCTGgtctTAGTAACATTATTGGAATAATTGTCTACATCTCAGCTAACTCAGGCGATCCAGGTCAGAGTGACTCAAAGAAGAGTTACTCATATGGTTGGTCCTTTTATTTTGGTGCTCTTTCCTTCATCATGGCTGAGACAGTGGGGGTGCTTGCTGTGCACATGTTTATTGAAAAGCATCGCAAGCAGCAGCGTGCCAAGACACTCGTCAAAAAGTCCAGTCTCGGTTTTGGCCGCATCCCCACGTACCGTTACCGTTTCGGGCGCCGCTCCAGTGAAACACCATCACGCGATGTCCCTATGTTCACGCTCTCACGCGACTCTGACAAAACTGCCGCGGGGAAGCTGCTTGACTCTGACAGAGACTTCCTGCACAACTCTAATGCTAAGGATGCAGCCAATCGGAGAACAACTCCAGTGTGACACGGGTGGATGGAGAAAAACAAAGGACCCGGGAAGTGGCGTCAAGACACACACAACTCCACAGAAGGATAGAAACCAATCAGCAGGAACAAAgcacacaggaagtgacatcgAAATAACTTTACAAGCCTTCTCTCCTAATATAAACCTTCTtcctataataatataaaagccTAGCTAGTGATTGTTAgttcttttaattttgttgaCTGATTTAAGGAGGAATACAAGCACACAGGAAGTGCCAGTTTTGCCACAGTTGGAATTTTGTTCACAGAGGCCTAACAGGAAATCCTTTGATTTGAACAGAACACTATGGATAATAATTATATGATCAGTTTATGTTATAGTCAAAGCTAGATAGTGATTTTTTGGTGCTTCCTTTTAGTCCTTGTTTGTTTTCAGTCATCAATTCATCCTTGGAACAAGTGCACACTCTTCTCCAGGGTTTTAAGTGTAAATCCCAGcatccaaacaaacacaaaatgacaaacacaagCTGGGTGCCTACATAGACCTCACATaaaccccctctctctctctctctctctctctctctctcctttctctctctacacacacatacatatatatacatacatacatacacaaacatatataatatttttacacaGGAAGTTATTCCACCAGGATGTTACAAACAGGAAAGTGAGATGGAAGTTGAGCTAGATCGTTGATGcttccttttgtttttatttttgtaaggTACAAACAATTTAAATGTAGCCTCAAATGTACAATGGTGGTCTTTCAGGTCCACTGATATATATTAAAGGTGTTCCTTTACAATTGTGTTTCTCTAACTGAAGGTATAAAGCATGTACCCTTAAGGGTCCCACCCCATTCCCCATTCCACTGGCAAGCATTTGTACCTTAAAATTCCAATTTTTGTATCTTATTtgaatattctctctctctctctctctctctctcacacacacacacacacacacacacacacaca

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253100 lncRNA downstream 49269 19417184 ~ 19422415 (-) True G213716
TU252899 lncRNA downstream 398699 19025072 ~ 19072985 (-) False G213549
TU252898 lncRNA downstream 440527 19023758 ~ 19031157 (-) True G213549
TU252732 lncRNA downstream 622537 18792435 ~ 18849147 (-) True G213407
TU253270 lncRNA upstream 159030 19663337 ~ 19663762 (-) True G213879
TU253468 lncRNA upstream 436047 19940354 ~ 19984149 (-) False lyar
TU253590 lncRNA upstream 516245 20020552 ~ 20056144 (-) True G214159
TU253634 lncRNA upstream 701487 20205794 ~ 20207145 (-) False hs3st1
TU253789 lncRNA upstream 931745 20436052 ~ 20438834 (-) True G214325
XM_026917050.2 mRNA downstream 23125 19429217 ~ 19448559 (-) True rbbp6
XM_026917051.2 mRNA downstream 23126 19429217 ~ 19448558 (-) False rbbp6
XM_034309659.1 mRNA downstream 117108 19349383 ~ 19354576 (-) True rpusd1
XM_026916976.2 mRNA downstream 183611 19273062 ~ 19288073 (-) False traf7
XM_026916975.2 mRNA downstream 183645 19273062 ~ 19288039 (-) True traf7
XM_026916503.2 mRNA upstream 14572 19518879 ~ 19625616 (-) True prkcbb
XM_026916501.2 mRNA upstream 38358 19542665 ~ 19625615 (-) False prkcbb
XM_034309789.1 mRNA upstream 125684 19629991 ~ 19636948 (-) True smarce1
XM_026916904.2 mRNA upstream 136943 19641250 ~ 19660028 (-) True ca10b
XM_026916671.2 mRNA upstream 160232 19664539 ~ 19715587 (-) True itga3a
TU253095 other downstream 23350 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 395344 19076269 ~ 19076340 (-) True trnat-cgu_6
TU252457 other downstream 1094321 18376077 ~ 18377363 (-) False LOC117598999
TU252076 other downstream 1618045 17828167 ~ 17853639 (-) True tsen54
TU252009 other downstream 1796400 17674827 ~ 17675284 (-) True G212750
TU253598 other upstream 536116 20040423 ~ 20063490 (-) False slc2a9l2
trnal-aag_9 other upstream 908542 20412849 ~ 20412930 (-) True trnal-aag_9
TU254170 other upstream 1510132 21014439 ~ 21027259 (-) True fgf2
LOC113546932 other upstream 2167855 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 2168515 21672822 ~ 21673330 (-) True LOC117598919

Expression Profile