RNA id: XM_026917235.2


Basic Information

Item Value
RNA id XM_026917235.2
length 3410
RNA type mRNA
GC content 0.43
exon number 6
gene id ankrd40
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12537412 ~ 12543062 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCATAATGAAACGAGTGCTTACTGCAGGTAGAGGACTTCTTTAGTCGGCGAAGCAGTACTTTTTAATCTTTAGCTGTCGCAAGTAGatttatatagttattattGTACTGAGATCTAGAGATTAGCCTGTCTGAAGCATTCCATAGAATacatttaggattttttttagcattattgCTATCCGCTAgctataaacaacaacaacaacatcgcGCTGTAATCGGATGACGGCAAGCATCGTGTTTCGCTGCTATTTGGGAATAAAACCTTCTGCACAAGGGGACTTTAACTGAGCTGTTCGTATGAAAGTCAAGTGCTGACTGCCAGGTGAATTATGTCCACGCTGTCTTTGGATAAAGAACTGCAAGAGCGCTTAAGAGAGGCGAGTGCTATTGGAGACCTTGACGAAGTGCGGACTTTAGTCGAGAGCGGAGTAAACATCAACTCCCAAAATGAAATCAATGGATGGACATGTTTACACTGGGCATGCAagagaaaccacaaacacaTAGTGGCGTATCTTCTGAATTCTGGGGCCGACAAAGAAATTCTCACTGCAAAAGATGAGTTAGCCGTACAGTTGACCTCCAAACCCGAGATCAGAAGACTGCTTGGAGtggaggaagaggagcatGAAGTAAAGGATGCAGAGCTGCCGATTATTCCAAACTATCTGTCTAACCCACCCTTCCTGTATTGCAAGATGGATAAAAGCGACCTGAGTGTAGCACGACACGTTTCCCAGAATGGCACCAGTGACCATTTGGAGGCTGTAGTCTCAGAGCCGGCCACTTTATCCCCCAtacaggagcagcagcagcagcagcagcagcagcagagcctgtACTCGGATGGCCAAAGCCAACCTGCATTGTCGTACGTCTCCATGGTAGAGCCGAGCAGCATTGTGCCAAACCAGGTGACTAATGGGACCCTGTCCATGGAGGTCTCCCCGGAGGTGCATCACAGCAACCATAATGAGTACACTCACAATCACAGCATTGCCCAGAACAGCCCTGTTTGTCCCCCACTCCCTTCAGCAAGCGCAGGCTCGAACCCCACCATTACCCGGCAACAGTCTGTCCCCCATCAGCTGAACGGCTCTCAGCCCGGGGGCTCTATGCCTGCCTTCCAGCCCTTCTTCTTCACCAGCACCTTCCCTGTAAACGTGCGAGAACTCGTTCTGAAGGTGCGAATCCAGAACCCACATGCCAGAGAAAATGATTTCATCGAGGTGGAGCTGGACAGACAGGAGCTGACGTACCGGGCGTTGCTGCGGGTCTGCTGCCGTGAGCTGGACATTAGTGCTGAGCATGTGGAGAAAATACGCAAGCTCCCCAACACTATGCTCAGAAAGGACAAAGATGTGGCTCGGCTTCAGGACTTCCAGGAACTGGAGGTGGTGTTGGAGAAGGCGGAGAGTTTGTCTTTGTTCTCTGGTCCAGGAGGGCTGAACGACAGGCCCTGCTACAACATGAAGGCCTCGAGGCTCACCTACTAGCTCCTGCCTCCAGACCAGCACGAGGTGGACTGACTCACTGCCCCATCTGGGACTGTAGTTCAAAATGCCTAATTCATACCTAGGTTCTGTTTTTGCCATTCTACAGATTAGATGCCATTCTTCCATTTTCCTCCTCAGTCTATATACAATGTTAGCCATATGCCTTTTCTCCCAAGCCTATATGTTGCCCGTGCATGGTCCCCACAGCCATCCGAAGAACGATGTGACgccctcctcctccactgtaaTCCTTGTTAGTTTTCTCACAAGTCTTTGGTTTTAAACGTCTTTCACAGTCATGACATCATCTTTTAGGAGCCACTATTTTTGAATATTCAAAATGTTCTTGCTCGGCTTTGGGCCGTATATCCAAATCTGTCACCTCCCATGTTGCTGGCCTACGTGAAGTTTTCAGATCTGTCTCACTGCTGTGTTTGCTTATGAGGCCACTGTGTGGTTTTGAGCACAGCTCACAGAGACAGTTGTGACCTGTACCAGCACTTCTTATTGTCAGTTATGGTCATTAACATATATGCACTCCTTTCCCAATACAAGCTATTTTAATTTGCACTGGCAAAGCACACAGCAAATTCGCTTGATTGCTAACATCCTCTTTAAAGCGTGTTAGCTTTTTTTAGTTCCACTTGGGAAAGCAGTTGTAGTTTGATGTACTAAAATACAGGAGCTTCATAAACTAAAAAGGAGGGGTGTTTTTcatgttctgtgtatgtgtgtttgccaCTTAATCCCCtgtgcactttaaaaaaaatgataacaaATGGGAGGTacttaaaaaaatgcatggggcttttctaattttattgatttttgaatACATAAGTGGTGTGTTTTGGTGCCATTGCTGCTCCTTCAGACACTGCAAACCAAAAACTATCCATATTATCTTGTATCAAGGCCtaataatcatttttcattCTGCACTGAATAATGTAGCAAAGATTGctgttgttttatgtaaatCTTAATTTTTAAAGGAATGAAAGATTCAAGAACAGGGTTTAATGAATGGGAGCTTCCACAAACACTTTCTTCTTATGAGTTTAATAGTTATAATAAGAGGGATAAAGTTACTATAATGGATATTGTTCTCTGGATCTAATTGCAGCACAGGTTTTATATTTAGGAAGCAGGATTCATACTTGATGACTGACTGGTCCATTTAGCAGCAGTGCCGTTCGACATAAGTAATTCTCTACAGGTCTGTTGCGGTCCCAGTTCCTAAGATAAAACTTGCAATActtctttgtcatttttatctaaataaaatttgtatacAGGCTAAAAGACACCTTGCACATGTAGACCAGGGGCTGTGCTTCATTTCTGTGAGTGGTTTTCACAACATTTTTAGTTCTGTAGATAGAAGGAAGTATAAAAGTAGGAAATTGAAAAATAGGCATAACTGTATTAATGGAGAAGGCATggctactgatttttttttttttttttttttttttaaacatactaaTTGGAAACTTGTTTATCTTGTTTTGGAAGAGTGTCTAACATAAACATAAGGGTGTCCTAATACAAAAGCTCGCTTAAAATGCAGAAACTGTTCACCTTTAACTTTAGTCCCTCTAAATATTGTATTGTTCTGTActatggatttattttatttattattttataaatttgacTGTAGAAAGGAGGATCCAGAGCACACTACAGCTGAAATGGAGCCAagcatttgtctgtctgtctgcctgtctgtctgtctatgtatcCATTGTGTTCTGTATGCTCATGAAAATGCTGACTATTCACCAGGTTGAGAAAGCTGCAAGGTTTCTGACTGATGTAAGGCATCAAAATTCTCTGTGGAAAACTCAGTGTACTAACTGGTCATGTTTGGGATGATGAATACAGTTAACCTATGCATCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579344.1 lncRNA downstream 73534 12446461 ~ 12463878 (-) True LOC117598772
TU248758 lncRNA downstream 203750 12333454 ~ 12333662 (-) True G209984
TU248756 lncRNA downstream 238435 12298124 ~ 12298977 (-) False LOC113528332
TU248726 lncRNA downstream 300220 12236974 ~ 12237192 (-) True G209961
TU248715 lncRNA downstream 363005 12173454 ~ 12174407 (-) True G209951
TU248929 lncRNA upstream 43369 12586431 ~ 12587089 (-) True G210123
TU249181 lncRNA upstream 324528 12867590 ~ 12868480 (-) True G210351
TU249178 lncRNA upstream 326190 12869252 ~ 12870186 (-) True G210349
TU249180 lncRNA upstream 378875 12921937 ~ 12923464 (-) True G210350
TU249177 lncRNA upstream 383583 12926645 ~ 12928808 (-) True G210348
XM_026916906.2 mRNA downstream 7111 12526340 ~ 12530301 (-) True wfikkn2a
XM_034310198.1 mRNA downstream 142834 12389706 ~ 12394578 (-) False LOC113528448
XM_034310199.1 mRNA downstream 142834 12389706 ~ 12394578 (-) False LOC113528448
XM_026916992.2 mRNA downstream 142834 12389706 ~ 12394578 (-) True LOC113528448
XM_026916993.2 mRNA downstream 143333 12389706 ~ 12394079 (-) False LOC113528448
XM_026917033.2 mRNA upstream 3271 12546333 ~ 12559213 (-) False tom1
XM_026917031.2 mRNA upstream 3271 12546333 ~ 12559213 (-) False tom1
XM_034310226.1 mRNA upstream 3271 12546333 ~ 12559212 (-) False tom1
XM_026917032.2 mRNA upstream 3271 12546333 ~ 12559212 (-) False tom1
XM_026917030.2 mRNA upstream 3271 12546333 ~ 12559212 (-) True tom1
TU248759 other downstream 198143 12333858 ~ 12339269 (-) True msrb1a
TU248755 other downstream 221943 12300005 ~ 12315469 (-) False LOC113528332
XR_003402971.1 other downstream 511840 12025502 ~ 12025572 (-) True LOC113528656
XR_003402968.1 other downstream 781489 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 836311 11699906 ~ 11701101 (-) False zgc:162612
XR_004579428.1 other upstream 5767 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 5767 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other upstream 5768 12548830 ~ 12559213 (-) False tom1
XR_004579427.1 other upstream 6058 12549120 ~ 12559213 (-) False tom1
trnas-aga_12 other upstream 283396 12826458 ~ 12826539 (-) True trnas-aga_12

Expression Profile