RNA id: XM_026917236.2


Basic Information

Item Value
RNA id XM_026917236.2
length 2286
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC113528592
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14183537 ~ 14202558 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGAGAGGACTGTATTCCTGACTGTAATCACCCTGTTAGTGCCTCAGTAAAGTTCACCGGTGGAGAAGCTGCAGCTATGGTGCAGAAGTATCAGTCACCAGTGCGGGTCTACAAGCACCCCTTTGAACTTATAATGGCGGCCTACGAGAGAAGATTCCCATCCTGCCCCCTAATCCCCATTTTTGTGCACAGCGACATCATCAGTGAGAGCCAGAGCGAGGATGGAGCGACTCATGTAATCGAGCGCAGGTGTACTCTTGATGTGGAGGCCCCTCGATTGTTGAAAAGGATAGCAGGGGTGGACTATCTGTACTTTGTGCAGAAAAACACACTGGATTGGCGACAGAGGAGTCTGCATATCGAGACCTACAATGAGTCCTTTTCCAGCAGGGTGATCGTCAAAGAGCACTGTAGCTACACGGTGCACCCAGAAAATGAAGACTGGACATGTTTTGAGCAGTCAGCCAGTATGGACATGAAGTCTTTTTTTGGATTTGAGAGTACAGCAGAGAAGATTGCTATGAGGCAGTATGCTTCCAGTATtagtaagGGCAAGGAGATTATTGAATATTACCTCAGAGAGCTAGAGACAGAGGGTATAACTCATATACCTCGCTGGACTCCTCCTTCCACCACCATAGCATCACCCCAGCTAACAGTCAACGCAGCCGTCATTCCCACACCCAACAGCAGCAAGGAAGACCAGGAAAGAGTGCATAGTAACCTTACAGAGAGCTTGCCTGCTTCTGTAGAAGATAAGTTAGATGCAGATTACATCAGACATTATCTAGGAGAGCTGAGTCCTCTGAATGAGAGTTGCTTCATCCGTCTACGGCAGTGGCTGCAGGAAACACACAAGGGAAAGCTCCCTAAAGACCAGCATGTGCTGCGGTTTCTACGCTCGCGGGACTTTAACGTAGAGAAAGCTCGAGAGGCACTGTGCCATACACTCACCTGGAGGAAGCAGCACCAGGTGGACTTCCTGTTGGACTCATGGAAGTGCCCACAGCTGTTGCGTGACTACTACACAGGGGGATGGCACTATCATGACAAAGATGGCCTACCTCTCTACATCTTACGGCTAGGACAAATGGACACCAAAGGACTTGTGCGGGCTTTAGGTGAAGAATCTCTTCTTCGACATGTGCTATCCATCAATGAGGAAGGTCTGAAGCGCTGCGAGGAGAACACAATCATCTTTGGTAGACCCATTAGTTGCTGGACCTGTCTGGTGGATCTGGAGGGGTTGAATATGAGGCATCTGTGGAGGCCAGGAATTAAAGCTTTACTGAGGATTATAGAGGTGGTGGAGGCCAACTACCCCGAGACACTAGGACGGTTGCTTATACTGAGAGCTCCTCGAGTCTTTCCTGTTCTCTGGACACTGATCAGCCCATTCATTGACGAGAACACTCGCAAGAAATTCCTCATCTACGCTGGGAATGACTATCAAGATTCAGGAGGCTTGGTGGATTACATAGACAGAGAGTTCATCCCTGATTTTCTCGGAGGAGATTGTCCATGTGATGTCCCGGACGGTGGCCTGGTTCCCAAATCTCTGTACCACACAGCAGAGGAGCTGGAAAATGAGGAGATCAAACTCTGGACTGAAACAATCTACAAAACTGCTAGTGTGTTCAAAGGAGCTCCACATGAGGTGTTGATTGCAATCACAGAGGCATCCTCAGTTATCACGTGGGACTTTGACGTGTGTAAAGGTGATGCTGTTTTCAACATCTATCACTCTAAAAAAGCCCCACAGACTCAGAAGAGGGATACTCTGGGTAATCTGACTGGTCCTGGAGGCAACAATGTGCAAATGATTGATAAGGCATGGATTCTGGGGAAGGACTACAGCTTGGTGGAAACAGCTCTAACTTGTAGAGAGGGCGAGAGCATCCAGGGTTCTCATGTAACACGTTGGCCTGGCTTCTACATACTGCAGTGGCGCTTCCACAGCTCAGCATCTAGCTTATCCTCACTTCAAGTCTCCACACAGAAGTGTAGGGTGATGTACTACACTGAAGTGCTGCGCTCTGACGACTTCAGGGGTTCTATGACAAGTCTGGAGTCCAGTCACAGTGGTTTCTCTCAGCTGAGCACCACTACCACCTCTTCTGGCCAGTCACATTCCAGCTCAGTCGCTTCATGGTAGAACATAAGCCGTATAAGAACTGCGATTGTTTAATACAAATTCTGTATAAAATGTTGCACAgaattttgtgttgttgttaCTTAAGTTGTTTGAATAATTTCTCATGTcataacatataataaaaataatc

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249911 lncRNA downstream 48233 14135094 ~ 14135304 (-) True G210952
TU249888 lncRNA downstream 182529 13993996 ~ 14001008 (-) False mcrip1
TU249866 lncRNA downstream 313964 13869199 ~ 13869573 (-) True G210915
TU249850 lncRNA downstream 339061 13843036 ~ 13844476 (-) False xylt2
TU249820 lncRNA downstream 359244 13758526 ~ 13824293 (-) True G210877
TU249932 lncRNA upstream 14115 14216673 ~ 14216872 (-) True G210973
TU249956 lncRNA upstream 91749 14294307 ~ 14298198 (-) True G210997
TU249962 lncRNA upstream 127028 14329586 ~ 14329920 (-) True G211003
TU250024 lncRNA upstream 259234 14461792 ~ 14462409 (-) True G211054
TU250187 lncRNA upstream 386262 14588820 ~ 14594664 (-) True G211187
XM_026917110.2 mRNA downstream 153896 14017615 ~ 14029641 (-) False pecam1
XM_026917109.2 mRNA downstream 153896 14017615 ~ 14029641 (-) True pecam1
XM_026916932.2 mRNA downstream 177025 14004169 ~ 14006512 (-) True LOC113528401
XM_034310273.1 mRNA downstream 182500 13993876 ~ 14001037 (-) False mcrip1
XM_026915988.2 mRNA downstream 182503 13993876 ~ 14001034 (-) True mcrip1
XM_034310166.1 mRNA upstream 176477 14379035 ~ 14391094 (-) True prpsap1
XM_034310167.1 mRNA upstream 176477 14379035 ~ 14391089 (-) False prpsap1
XM_034310310.1 mRNA upstream 191671 14394229 ~ 14410677 (-) False LOC113527937
XM_034310309.1 mRNA upstream 191671 14394229 ~ 14410677 (-) False LOC113527937
XM_034310306.1 mRNA upstream 191671 14394229 ~ 14410677 (-) True LOC113527937
XR_003402952.2 other downstream 153896 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 177025 14004169 ~ 14006512 (-) False LOC113528401
XR_004579330.1 other downstream 784312 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 1356998 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579426.1 other downstream 1624324 12548830 ~ 12559213 (-) False tom1
XR_004579449.1 other upstream 285263 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 317719 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 476192 14678750 ~ 14690132 (-) False LOC113528445
XR_003402969.1 other upstream 1269219 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 3090293 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile