RNA id: XM_026917240.2


Basic Information

Item Value
RNA id XM_026917240.2
length 2857
RNA type mRNA
GC content 0.47
exon number 12
gene id nmt1a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5962688 ~ 5978373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTCAAAGGCGAGTTCTTCACTTCCTCGTTAATCATGGCGGATGAGAATGAGACAGCACCGAAGCAGGAGAAAGAAGTGGAGCTAGAGGAGGACCATGGACATTGTAGCGACTGCGAAAATGAAGAGCATCATTTCGATGATGGGGAAAAGGGGGACACAGGggccaagaagaagaaaaagaaacagaagaaaaagaaggacaAATCTGGAGGAAAGGATGCAGCCCAGGACCCATTGGCCAAAGTGAACTCTCTCCCTGCCGATAAGCTTCAGGAGATTCAGAAAGCCATCGAGCTCTTCTCAGTGGGACCAGGACCAGCCAAAACCATGGAAGAGGCCTCACGCCGTAGCTACCAGTTCTGGGACACTCAGCCTGTCCCTAAACTAGGAGAGATGGTGACAACACACGGCTGCATTGAGCCTGATAAAGATAACATCCGAGAGGAGCCGTACAGCCTTCCTCAGGGTTTCAGTTGGGATGCACTGGACCTCGGCAACCCTGCtgtgCTAAAGGAGCTGTACACTCTCCTGAACGAGAACTACGTGGAGGATGATGATAACATGTTCCGCTTTGACTATTCGCCTGAGTTCCTGCTGTGGGCGCTACGTCCTCCAGGCTGGTTGCCGCAGTGGCACTGTGGCGTGAGAGTCAACTCCAATCATAAACTCGTGGGCTTCATCAGTGCCATCCCAGCCACCATCCGCATCTACGACATAGAGAAGAAGATGGTGGAGATTAATTTCCTGTGTGTGCACAAAAAGCTGCGCTCCAAACGCGTGGCTCCGGTGCTGATCCGAGAGATCACCAGACGGGTCAACCTGCAGGGCATCTTCCAGGCTGTCTACACTGCCGGAGTGGTACTGCCCAAACCTGTGGGGACctgcagataCTGGCACCGATCTCTGAACCCCAGGAAGCTGATTGAAGTGAAGTTTTCACACCTGAGTCGGAACATGACTATGCAACGCACTATGAAGCTCTACCGGCTGCCAGAGGCTCCGAAGACCGGAGGCTTGAGGCCGATGACGTTGAAGGACGTCCCAGCGGTGCACCGCCTGCTGCAGGATTATCTCCGTCAGTTCCACCTGGCCCCAGCCATGAGCACGGAGGAGGTGCAGCACTGGCTCCTGCCCCAGGAGAACATCATCGACACCTACGTGGTGGAGAATCCTGAGGGGAAAGTGACGGACCTCCTGAGTTTTTACACCTTGCCATCCACCATCATGAGCCACCCGGTGCACCGCAGTCTGAAGGCGGCGTATTCCTTCTACAACGTGCACACCAAAACGCCGCTGATCGATCTGATGGGAGACGCACTCATCTTAGCCAAATCGAAAGgatttgatgtttttaatgCACTGGACCTGATGGAGAACAAGACGTTCCTGGAGAAGCTGAAGTTTGGTATCGGAGACGGGAATCTACAGTATTATCTGTACAATTGGAAATGCCCCAGCATGGGCCCAGAGAAAGTCGGTTTAGTCCTGCAGTGACCCTCTTGCCTCATCAAAGCCCTTCCTTGCGTCGTAGTGAAGCCAACAACTGACGTCACGCACTGACCACCTGCCTGATGCTCCGGAGGGACTTCCAGGTTTAGGAAGAAAAAGCCAccgcccatttttttttttttgcagaacttTGAACTTTTGGACCTGCACTACCGCTGCCAggctgtctcttttttttctctttttcctttctctgtgtctcctcTTCCTTATAGTCTCTggttcttttttcttctttctccctCAGCACTTGGATCTGAAGCCACTGTAATTAATCCCGGTTCATCCACGATCACAACCGTTGCGATTGTGGATTGTGATGCGAGCACGAATCTGCGCTCAGAAACAGTAGCTGCTCCTTCACGCCGTCTCCAACGATGCGCACTCAGACAGTGAAAAGACTCAGTCCAGCCATTTTTCTCCCCGTCCaaatgtgaggtttttttttttttttttttgcgaaaagaaaaaagagaactgTTATCTGCGCttggtgtttgttttgttacaaTCAAAAACACTAGAAAATGCTTGAAACAGTGAAACAACgacgagaaaaaaaaagcagatgagATAATAAAACTCCAGAATGGACATTACAAGGGCTGCTGTcagtaattttcttttttaatcgcCATGACAGTGTCACTGATTAATTGATGTCGTACATAATGTAAgggagagattttttttttttttttaactcctttgctttaatgttttttctGATTGATGGATCGCTGCTTTAACTGACTGCCTGTGATTTCACTGTAATGCCAACAGAGAAGCTCagtgtaaatacataaataacacaTAACAGCAAAATATCCATGAAATAAATGACAGCTAGGAGTCCAGACCATGGACATGGACTAATGATTAATCCTGAGAGGTCGAATGCTGACTGACatgaataatgagtgtgttgGAAAGGTGGAGACGCATCAGGGGTTGTGAGCAGggttgaaataaatatttaaatgcagagctgaatacaatgttttgtttttgttttttgtaaggGGTTGTATACGGTTTAAGTCAAATCTAATTACAATCCTCATAAAGTTTTACTGCTGCAGGAAGACGACTGTACGGCGTGATCAAACATCTATCAAGCATCTGAAAACTAGTTCAGCGAAACGTATTCTCCGGTGTGGTTCAGTGTTTTACATACGGGAAGTGTTGACTTAAAGCCATAGTGTTGAACTGACACAGTTACAAAGGAACACCTAGAGCAGTAGAAGTTTACGAGTTTAATTTTTGGGTTTCTTTGCCGATAATATGGAAGAAACAGAACTGAATAAGACTTAACCAACTGtattaggacaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006499 N-terminal protein myristoylation biological_process
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity molecular_function

KEGG:

id description
K00671 NMT; glycylpeptide N-tetradecanoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402949.2 lncRNA downstream 9184 5952798 ~ 5953504 (-) True LOC113528476
TU244141 lncRNA downstream 235008 5721634 ~ 5727680 (-) True G206210
TU244080 lncRNA downstream 330769 5631715 ~ 5631919 (-) True G206164
XR_003402932.2 lncRNA downstream 677783 5280730 ~ 5284905 (-) True LOC113528378
TU243539 lncRNA downstream 870766 5089336 ~ 5091922 (-) False G205633
XR_003402891.2 lncRNA upstream 209101 6187474 ~ 6189926 (-) True LOC113527891
TU244662 lncRNA upstream 224939 6203312 ~ 6204196 (-) True G206628
TU244696 lncRNA upstream 295443 6273816 ~ 6346363 (-) True G206649
TU244981 lncRNA upstream 667724 6646097 ~ 6647814 (-) False stat5a
TU245006 lncRNA upstream 846523 6824896 ~ 6825760 (-) True G206924
XM_026917153.2 mRNA downstream 1638 5955746 ~ 5961050 (-) False LOC113528542
XM_026916772.2 mRNA downstream 11691 5940866 ~ 5950997 (-) True retsat
XM_026916974.2 mRNA downstream 24257 5934040 ~ 5938431 (-) True cdk21
XM_034309809.1 mRNA downstream 24274 5934040 ~ 5938414 (-) False cdk21
XM_026916320.2 mRNA downstream 31470 5897560 ~ 5931218 (-) False svilc
XM_026916955.2 mRNA upstream 2827 5981200 ~ 6017987 (-) True plcd3a
XM_026917015.2 mRNA upstream 47906 6026279 ~ 6105884 (-) False arhgap23a
XM_026917014.2 mRNA upstream 47906 6026279 ~ 6091130 (-) False arhgap23a
XM_026917013.2 mRNA upstream 47906 6026279 ~ 6068841 (-) False arhgap23a
XM_026917011.2 mRNA upstream 47906 6026279 ~ 6068841 (-) True arhgap23a
XR_004579347.1 other downstream 1638 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 1638 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 11691 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 121211 5841137 ~ 5841477 (-) True G206282
TU244177 other downstream 205955 5754767 ~ 5756733 (-) True G206236
TU244626 other upstream 148537 6126910 ~ 6194996 (-) True G206604
trnac-gca_16 other upstream 1292533 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 1293882 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 1294684 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 1295933 7274306 ~ 7274377 (-) True trnac-gca_20

Expression Profile