RNA id: XM_034310259.1


Basic Information

Item Value
RNA id XM_034310259.1
length 6909
RNA type mRNA
GC content 0.41
exon number 11
gene id znf385c
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6350664 ~ 6443282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGTGATGTTGGGCTTGGTGGTGGAACACGCGGAGGAAAGAAACGGAACCGTGTAATGTAATTGGTTAATGGAACACCACAGTGCAGATGTGACAGTGCGAGAGTTCAAGTGACACTTCTGTTAGCTGACAAGGGATGAAGCATTTCTTCAGTGCTGTTGATGGACTTGGAGCTTTGACTGAAGAAACCAGACTCGATACCGTACCTTCCGACGAGGCCAATATTACAAGACACAAAGCCCCGCCCCTAAACACTCGTCCGAAGCAGGAACGTAAACACAGATCGTACACAGTGTGCGAAGTGTGTAACATTCAGCTGAACTCAGCTGCACAGGCACAGATACACTACAACGGCAAAACCCACCAGAAGAGACTGAAACACATGAACAGTGGAAACACAGGTCCGGCGGCTCAGGGCAGCCCCCTGCTGGCTGCGTTACCTGTACAGACTCGCCCATTGCAGACGCCTCTGGAGCTCAAGAACTTTCTGCCCTTCAGACTCAACGGCTCCAATCCACTCAGCCTCTTTCCCAACTTCAATACGatGGACCCTGTCCAGAAGGCTGTTATTAACCACACCTTTGGAGTTCCTCAGAAGAAGAAGCAGGTTATCTCCTGCAACATCTGCCACCTTCGGTTCAACTCCACGAATCAGGCCGAAGCACATTATAAAGGTCATAAGCACGCTCGTAAACTGAAGGCTTTGGAGGCCCAGAAGAACAAGCAGCACAGACGGCAGCTCGACGCCACACACAGCAgccgagacagagagaaagacagagacagagacagagggaggatgATTGCACCTGATCCTCTCCCTGCTCTCCCGGATTCCTGCGCAGTGGaagcatccaCTCTTCAGTGTGACTCCGACTCTGTGGTGAAGCTGAATGAGGCTCAGGTCAGCTCAGTGGTCCTCACTCCGGTATCTGAGGTGTCATGCGCAGATGTGGCcgtctcctctcctccctcgcAGCACTCAGACAGCCTGCAGGATGCTGCTGGTCCCAGCGAGACAGGCACCGAGCAGGACAGCCTAGCTAAAGAGACCCCGAGGGAGAAAGACCCCAGGAGGAGCAAGCATCACCTGCACTGTCCTGTCTGCAAAGTGACAGTCAACTCAATCACTCAACTGGAGGCCCACAACAGCGGCATCAAGCACAAACTGATGCTGGAGGGACAGAGCGTGTTGCCACGGCGACGAGGGAAGGCACTGTCCTCCCGTGCCGCGTGTAAAAGCAAGCGACTGGCCAACAAGGGCAGCCTGGGTGTGAGCAGCAAGAGCTTCcattgtgaagtgtgtgagatcCACGTCAACTCAGAGACCCAGCTCaaccagCACATGAACAGTCGCAGACATAAAGACAGATTGGCCGGAAAGCCGCCCAAACCCAAATTCAGCCCTCACAGCAAGACTCAACCAACCTCAGCAGTGTcgCAGAGTGTCAGGTGGAATGGCTATGCAGGAGGAGCCGTGTCAGCCATGAAAAAAGTCTTTAACCAGTACAGTCTCACCTCTCTGTCTTCACAGaCCAAACTGGCTCTCCAGAAGCAGCTGACTAAAAATTTGACCACCAGTTTCCTGCCCGCTCCTATAACTCCGCCCACGCTTTGCACAGTGGCAACCAATCCCCTCACTCTCCGACACCCTACCGGTGCCGCCTTCATTCCTGCTCCAATCTTAGGCCCTACCCTCTTTCGGCCTGCGCCAGGACCACTGcgggccacacacacacctatcctATTCTCACCTTATTAAAGTATGCATTaacgtacacacatacacatacatgcgGTTATGGTACAGGTATGATTTGGTGTTACAGTTGACTTTCACGCACAGAACAAACAACATGGTCTTAAAAAATCTCaaaactgatacacacactccaaTTTTTCTGCACTCTCCTCTAGGACTGTGGCCCTCACAAGAGGATCACTCTTGAACTATGCAGCACAGAAAGGTAGAAAGCAAAGACAGAGATAGATGATTTGAGAGAAAACACGGAAGCAAGAGGAGACATACGCGCACACGCCCCCAGGCTGGGGGAGGGCCCTAGAGACCTCATTGACCCACCCACCTCTCTCTATTCCTTCAAATAGAGGTTGACTGATAGGTCACGCCTCCAGGGAAATGCGTGGAGCCTCGTATAGTTGGCTGGGACCTCATATAGTTTTATAAGACATTAACCATAGGATTTTACTGTGTAATTTATTAGAAGTACTACAGCATTAGAGGAATAGAGCACATTTCCTAGTGAGACAAATGCAAACATCCCTTTACTCgaggcttcttttttttaaatctgtgtttatgctttttaatttgacgtttcattcattttttttcccaacacgAACAAACATGTTATTGCTCCCCTGGAAACCATAAGAGCTTTCGCTTTGCATCGTGGGTAATCATCGTGGAATCATCAGTGAGTACAAGTGCAGTGCACTGAGATGACAATTTGCAGGCAAATCAGCACTCGATTGCTAACACACatagacacgcacacacagtcgCACACAATCAGTGTTCCAATTTTTTCTGCATAGATTAGATGATTTTGAGTCAGACTgatacacacatgcgcacacatagacacacgcacacacacacacacacacacacacacggatgaTTATAACAGTCTCACATTTCGGCCCTGCATGTTGGTACATTTTGCTCTCAGTGTTATCTCATTAAGACCTCACAAAGGTCAACCTGTCAGTCAAAATCCATCTCACATCACCTGATTACAGTTTCAATTTTGCCACGTTATTTGAGTgcgtgagtgtgtatgagtgtgtgtatgagtatgtgtgcatgtgtgacacATACCAACCTCATTCCCTCATAGACACTGCAGCGCGTCTCTCTCATACAGCAGCGCTCTCTGCTGTACAAGGAGGAGCACTGTATTTTTTCCTGCCAATCGGGGCTTtctaaaggaatactccagcatttttaaCTTTAATCTTTATCTACCACATCTAGAGCTTATATGTGTTTATCACCAACAAGAATTTTGatgtgagaaaagaacagaaagcctGTTTACACATACCTCATTTATAATGAAAGTCTAAAGGCTGTTGTATCTCTATACGGATATGCAAAGTTCTTCTgtctgatcacctttatcctataatGAAATGCTTCTATTCCCAATGGGCGTGGTCTCTATCAGGATGACTCCACCCACATCCACAAGGCATAAGGACTCACTGATTAgattgatgaggatgaaaaacatgtgctatggccttcacagtcagcAGATCTTACTCtaactgaacacctatgggagattttggactgataTATTAGACAGTTTTCTTgctataattattaaaataccaattgagggaatatcttttggaagaatggtgttcatcactCCGGTACAGTTCGCTACATACAGATGTAGagttatatgaatataaaaagagagagagagagagagagagagagtcagcggtgtagtacacaaagtttACAGAAAAATAGGTTGTTTCAGACAAAAGTCCCTCATCAGCTCTGTAGAATTTTtataatacagtactgtgcaaaagtcttaggcaccctctgttcttaaatacattttatacctACTTTCTTACTGTAAATTGTATGCCTACTGCATTAGTGTTtcagtagaaaagaaaaaaaatatacatttccaaatattaacaaatattaacatttttctttataatattacaaaaaatgtaaGTAATAGATCATTGTAAGTAATGGACTGCATAAAAAGATCAAGGTATAAAtcaatctgattaaaaaaaaaaaaaaaaaaaaaaaaaacaagttctcCATGAAACCTGTGAAACCTGGAGCAAACTACCAGCCAACCtccttagaaaactgcattACAGCGTACAGAAAAGAATTTATTCCGTTTTAAGGCCAATTACGATTCGGTTTTATGTTTCACtgcttgttttattgtttggTGCTCAACATAGTAATTATTTTGATACTTTTATCTTCACCTTACACAATGTCTTTAGAAGTGTCTAATACCTTTGTACAGTGCTGTATATGAATTAATGTGTGACATTTTTGTTGAATACtttcatgaatttttcagtCAAAGCTATTTGTAAATTATGCATGATACTGACTTGTGGAAGCGTTGAATGTGTTGAAAGTGCATTTGAATTCCAtcaagaaatgttaaaaaatactatataaCACTAATTCAAACAATAACTGTTACACTCCAGCACAGAAAAGGTCTTCAGATGAGACAAGTATGAGAaactgttttctgttcttttgcatttttattcatctttcaaCACAGAGGCAATGCAGCAAACAGTGATTCTTGTTGGTTATACTTTCCCGAAGGTTGAGTGATAATCCATATGTGAGTTTtagagcttaatttacaaatacctTTGACGAATTTAGGAAAagtttctacaaaaaaaaggtGCTCAAAGCTTTTTAATCAAAAAGGGAACAAgatggaattttaaaaaccgTCCCTTTAGACTTACATTATAAGTGACTttggagtaaacaggttttctgtccttttctccGTACATGAAAACACGTTGAAATCCATATCGGTGGTGAtcacacatatttacatgagCAGTAGATTAAGATTTAAGTTGAAAAATGCTGGCATTTAACTCTTGATCTGCAGTGATGTGTTGCTGCTCAATCTGTTACACTCAGTACATTCatttatctgttcatttttttttccatgttctgAAATATTAAGATATTTTACAAAGTCTTTAAGAAGATTACTTTAAAAAGTTGTCTATATTAGGTTGTATGTAGATTTCTAAATATGTAGAGAGTATGTAGAAAATTTATCAGAgtcattattgtcattattgcTATGATAAGAACAATTTCTATCTGAAGGGTCTTCTATTGTTTGCCAAGTCATAACAAAGATTACAAAGATTATGAAATAAGAACATATGCCAAGAATGAGTTAGTATATTTACCTACTTTTTATGATttaatatattgaaaaaaatatcagtgtggGAGGAaatcaaggtgtgtgtgtgtttatgtgtgtgtgtgtgtatgaatgtgtgtgtgagagagattatgcaaagaaaaaaaaaaaacagcatgactAAATGATATGTCTTATTGCATTTGGGACATTTCAGCTTCAAAGCCTACAGTGACAGGCGAGTCTCAGGGCTCCTGTTTGAGCTCCATCAGAGGAGAAGTTAAACAGAGTAAAACATCAGCCATACTGTAATCCAACCTGGAGCATAGCAAGCATAGGGTGTGGATCAGGATGTGGGTCAAAGACGATAAAGGGTTTACAACGTCATACCGTTTATCAGCAGTGctgaagattaaaataaaacgtactctaaataaatgaaatttggacatttggtttaaaaaaaaaaataaaagcacaattGAAGTAGAAGCTATAACAGCCAAATATTGACattaacaaaattttaaataaaatggtgtATAAATTGTCTAGTCTATTATTTGTACACTACATGAGAAGTATAGCTAAAGCCTtatatgtctttttttcattatctaTTTTCCCGTATCGTATTTTAATGTGCTGAATTTctgctaaatatatttttgacttttttttttttagtaaagtaATCCAGTTACACAGGAAGAATCCCAATGTGTAgtacaaagaaatgaaattcagtttgtttgtgtgttgaaaaCCCTTTTTGTCTTTGATCCATGTACAAACCACGACTTTTCCTGAAATTtcagaaatctctctctctgtctctctgtatgtgtgtgtatatgcacatgtgtatgtgtgtgcttgtatgtGGATGATATCAGTTATCATCAAACACACATGAAGGGCCCTGGATATCTGTTCTGCTTGTTCTCTCCTTCAGTATGTAAAATCTGTTGAGCAATAACACTGTTTGGAGCTGCAATAGCCATAATCAGAGTGTGAAACACATTTCCTTTTATATAAAATGGAAATTTAGCCATGATTTTTTACCTTTCTCTGTGACACTGGCCATCTcgctgtctgtctttgtgtcctCCTTCCTCTTGGTTACTGTTGAATTAATGCCAGTGAAaatgccagtttttttttttcccctgcactCTGGACGAGATTGAATCTGTGTAATGGTACGTCTTGTAGGACAGAAGGCAGCCATGGAAACATCAGTTGCCAGCGGTGACAAGACAGACGAAGGCATTTTGCGGCACATTTGCTGCAGTGCTTTTAAAAGTGACTTCAACAGTCCTGTTTTGCTTTGGTGGACGTGCAATAAGAGGGGTCTCATTTCGATTGCATACTTTCTTATACggtaaaggaatactccagtgtttttcaaacTCTTCTCTATCTACTCTATTTGTAATGTACATGTGATTAAAGCACACAAGACATTCAATATTTCGAAAACCTGTTTATTCAGACTGAGGTGCAATGAACGTTTAAGGGCAGtcagttaatgtttaaaatattactatatAATGTACAGTTACAATGGCAATAAAGGTCTTAGGATAAGACAAACGTGAAAGAAAGTCTTACCAAAGCTGGTAGTTTTGTCAAGCAATACAGTAATACAGTGGTGTCTACTAGGGGTGCAACACatcactatctgtatctgtttatctgtgactgtattcggatttaaacccgAGGTaggcattatttatttacttacttatttaattatgaAACCTATGACTATGCCCCCAGAAACActacaaaacaatgaaaaaaaaagaacctgaCTGTAGAAATGGTAGCACTTTGAAATCTGGctgtgacagttcctcaacctcagctacatcactcaagttcataactggcctcaactagagatgtgcacaaaaatgtttttcttcaacctgcttatttttgtttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244696 lncRNA downstream 4301 6273816 ~ 6346363 (-) True G206649
TU244662 lncRNA downstream 146468 6203312 ~ 6204196 (-) True G206628
XR_003402891.2 lncRNA downstream 160738 6187474 ~ 6189926 (-) True LOC113527891
XR_003402949.2 lncRNA downstream 397160 5952798 ~ 5953504 (-) True LOC113528476
TU244141 lncRNA downstream 622984 5721634 ~ 5727680 (-) True G206210
TU244981 lncRNA upstream 202901 6646097 ~ 6647814 (-) False stat5a
TU245006 lncRNA upstream 381700 6824896 ~ 6825760 (-) True G206924
TU245005 lncRNA upstream 383172 6826368 ~ 6828146 (-) True G206923
TU245188 lncRNA upstream 659052 7102248 ~ 7102389 (-) True G207057
TU245372 lncRNA upstream 733336 7176532 ~ 7176755 (-) True G207198
XM_026917253.2 mRNA downstream 9433 6323202 ~ 6341231 (-) True dnajc7
XM_026917254.2 mRNA downstream 27537 6315299 ~ 6323127 (-) True ttc25
XM_034310084.1 mRNA downstream 37856 6307670 ~ 6312808 (-) False cnp
XM_026917300.2 mRNA upstream 17927 6461123 ~ 6467897 (-) True dhx58
XM_026917301.2 mRNA upstream 17927 6461123 ~ 6467641 (-) False dhx58
XM_026916972.2 mRNA upstream 25158 6468354 ~ 6481284 (-) True kat2a
XM_026916531.2 mRNA upstream 40475 6483671 ~ 6501470 (-) True rab5c
XM_026916862.2 mRNA upstream 63508 6506704 ~ 6548501 (-) True kcnh4a
TU244626 other downstream 155668 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 389614 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 389614 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 399667 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 509187 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 827710 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 829059 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 829861 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 831110 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 875407 7318603 ~ 7321962 (-) True G207231

Expression Profile