RNA id: XM_026917257.2


Basic Information

Item Value
RNA id XM_026917257.2
length 2758
RNA type mRNA
GC content 0.43
exon number 7
gene id kctd13
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8929611 ~ 8936540 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAGTGACAGACATGTGTTTTGACCAATCGGCTGTAGAGTTTCCTGCACCTTGGAAAGTACTCAAGAGGAAGCGAGTAGTGGATGAGGACTGAcggaaaataaaactgaaaacacaaatattgaaaataacatttcgtatataattattaatgtaaaccctctgttttttaattgtgtttgaGCTTCAGGGCGCTTATTCATTCACGCAGCTCGACAGTACATTACAAGGGTTGGACTGCTTTTTCCTGATGTCTGCTGAAGCTTCTGGTGGGAATGTGGTGCCGGAGCCCAGCTGTGCCCCTCCGTCCCCCAGCCATGGCGTGGAGAAGAAGGCAGGACCAGGTCTGGCTGGCAGTAATTACGTGAAGCTGAACGTTGGTGGATCCCTGCATTACACCACAGTCCAGACCCTCAGCAAAGAGGACAGCCTGCTCAGGAGGATATGTGACGGCAGTGTGGAGGTGACCATCGATTCAGAAGGCTGGGTGGTGTTGGACAGAGGTGGACGCCATTTCTCCCTGGTGCTGAACTTCCTACGAGATGGCACTGTGCCACTCCCCGAGAGCCAGAGGGAGCTGGAGGAGGTACTGAAGGAGGCGCAGTACTACAGACTGCAGGGTCTCATCCAGCACTGCCTTTCCACACTGCAGAAACGCAGTGAGGTCTATGAGGGAGGCTGTCACATCCCTATGATCACCTCTGCCAAGGAGGAACAGCGAATGATCGCCACCTGCAAGAAGCCTGTGGTGAAATTGCAGAATAATAGAGGGAACAATAAATATTCCTATACCAGTAACTCAGATGACAACTTGCTGAAGAACATTGAGCTGTTTGATAAACTGGGGCTGCGCTTTAATGGTAGAGTGCTTTTCATTAAAGACGTGCTCGGAGATGAAATCTGCTGCTGGTCCTTCTACGGAGATGGACGGAAGATCGCTGAGGTTTGCTGTACCTCCATCGTTTATGCGACCGAGAAGAAACAGACCAAAGTTGAGTTCCCAGAAGCTCGCATCTTTGAAGAAACCCTAAACATACTAATCTATGAGAATGGTCGGGGCTCTGGTCATGGAGGCATGGGTTTATTGGACTCAGGTGGTGTCTCATCTCCAGGTGTGGGTCAGTCAGAGGAAGACGGGGCTGGTGTGGGGGGTGGAGACAGACGTGTGAGGAGGATCCATGTACGGAGGCATATTATGCATGACGAGAGGGGGCATGGACAGCAGACTGTGTACAAGGACTGAAAGCAGGGATGGAGGGAGAAATGATAAACATGAGTAGTAAAAAGAGCCTAATGGTACTATAACAGGACAATTGTGAATAATTCATATGCAGGGACTTGGATACAAGGATGGATGGGTGGGGGGTTGAGCAGCAATGGGAATCGATCTTGGGTACAGTAACACTGCACTAAGAAATAATCTCAAGAGCCACAGTgtggtttctttttattttatttttgaggaTGAATGTATATCATTCTgagttttgctttatttttatttattattctgttaaTTTATTGTCCATAATTttcaacttttttaaaaaaaagaatatgcgTGAaatatcttgtgtgtgtgtgtgtgcaagaatTGTGAATGCGTAATGATGAACTGTGATGTTTTTCTGTGGggatgtgtgtgttggctgACAGCTGCAGAGGTACATAGAGACGACTCATTCTTGACTAACGTATGATGCATGTTCCCACTAGAGTGGGTGCCGTCCTGGACCTTTCCTTAAAGTATCCCAAAAGAAGTGTTTAAGTAATCCTTATATAAACACTCCACTGTTGTTCTTCATCAACTGTGTctgtagcgtgtgtgtgattgcgaCAGACAGGAATTTTCTATgtgtttccctgtactgaggAAAGGGGGAAAACCTGTTCACTCAAAGCACACCTATAATGAGAGTATAAAGGCAGTTGCAAATTCCTGTCAGTAAGATACagtgcatataaaataaaactacaacCGTTATGTTCTAATAATAAAGAAGAGGCAGACCTGAGtcttaaaaaaaagctgttcttatgtggttttatccaactttccaaCACTTTTCTACAAGATTTTTGGTATCCATGCCCAATAAAGTCTACACAACTATGCTGGTAACCCATAATGACAACTTCTTCCTTAGAACTAAGTAGTCTTAGGGAAGAATATGTAGTGGTTTAGATCTTAATTTACAATACCTTTGAATAAGGGAATTCATGTatgcataaatgtttatagacCGAAATAAACAAATACCCTTAGACTTCCAGTATAAGCGAGCATCTTTTCAGTACAGGAAAACGCATCAGCAAGTTttatttgtaacagtcacgCATTTGCTACAGATattttagatagatagagtttaaaaacactggagtatttcTTCAAGGAGCTACATCTCAGTTTAGAAATCTGCTATTGTTTCATCAAGCAGCCAGGCAATGTATGTTTTCAGTTTAAATCTTTCAAAAGCCCTATAAACCAGTTATATAAGCATAcccaaaatgtgtgtgaatatggaATTATCTGACCATTTACTTGAAGACTGACTAGAAGGACAAACTCTTGGGAAACTGACAAAATGTTATGCTGATTTGGCCATAGCAGGTTTTCTATAGCCAGAGAATCATCCAAAGGACTGACAAACCTGGGCAGGAATTACTTTTATAGATCATTGTATACAAAACTGCCAAACATTGTTGCATATCCACTGCAAAAacttccatttttgttttgggTATAAGGTGGCAG

Function

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0051260 protein homooligomerization biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0006811 ion transport biological_process
GO:0007420 brain development biological_process
GO:0061351 neural precursor cell proliferation biological_process

KEGG:

id description
K15074 BACURD; BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246391 lncRNA downstream 15052 8871976 ~ 8914559 (-) True G208063
TU246390 lncRNA downstream 56109 8860563 ~ 8873502 (-) True G208062
TU246332 lncRNA downstream 280248 8574635 ~ 8649363 (-) True G208016
TU246164 lncRNA downstream 394899 8534503 ~ 8534712 (-) True G207895
TU246126 lncRNA downstream 436570 8492815 ~ 8493041 (-) True G207860
TU246437 lncRNA upstream 18902 8955442 ~ 8955655 (-) True G208097
TU246438 lncRNA upstream 19326 8955866 ~ 8956397 (-) True G208098
TU246439 lncRNA upstream 20721 8957261 ~ 8958211 (-) True G208099
TU246517 lncRNA upstream 70460 9007000 ~ 9007259 (-) True G208145
TU246529 lncRNA upstream 88221 9024761 ~ 9024983 (-) True G208151
XM_026916344.2 mRNA downstream 1700 8921509 ~ 8927911 (-) True hirip3
XM_026916561.2 mRNA downstream 94875 8811408 ~ 8834736 (-) False taok2a
XM_026916560.2 mRNA downstream 94875 8811408 ~ 8834736 (-) True taok2a
XM_026917151.2 mRNA downstream 120630 8805242 ~ 8808981 (-) True cdipt
XM_026917145.2 mRNA downstream 126756 8795520 ~ 8802855 (-) False LOC113528536
XM_026916735.2 mRNA upstream 1023 8937563 ~ 8953319 (-) False sez6l2
XM_026916736.2 mRNA upstream 1023 8937563 ~ 8952757 (-) False sez6l2
XM_026916734.2 mRNA upstream 1023 8937563 ~ 8952757 (-) True sez6l2
XM_034310141.1 mRNA upstream 1023 8937563 ~ 8951760 (-) False sez6l2
XM_026916899.2 mRNA upstream 36747 8973287 ~ 8983377 (-) True pitpnbl
TU246334 other downstream 216293 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 645019 8284474 ~ 8284592 (-) True LOC113528661
XR_003402917.2 other downstream 661973 8249885 ~ 8267638 (-) False slc4a1a
TU245462 other downstream 1498539 7425730 ~ 7431072 (-) False natd1
trnav-cac_10 other upstream 250980 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 259956 9196496 ~ 9203640 (-) False dnal4a
TU246678 other upstream 259956 9196496 ~ 9203640 (-) True dnal4a
TU246802 other upstream 473264 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 473264 9409804 ~ 9419584 (-) False prr15la

Expression Profile