RNA id: XM_026917260.2


Basic Information

Item Value
RNA id XM_026917260.2
length 2237
RNA type mRNA
GC content 0.49
exon number 9
gene id msl1a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9912768 ~ 9917101 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCCAATCTTCGGCGTCCAATCAAATCTCGCGATCTATGACTTCAACGCATGCGcgctttttgtattttaaaagcACTTGAGAAGCTCGGGGATCAGCATGGATGTGGACAGGGTGGCCTGGGCGCATGGCAAACAGGCACTAAACCCCCTTTAATCACAGCGGTGGGTTTTGGTGAGTGCCTTTGACTCGCCATGACTATGCGAGCCACTGTGTTCAAAAGTGGAGGAAACAAGCTGGACACGGACACCGGTGACCAAGCTAAAAAACAAGAATCTCAGACCGGCTCAAAGAAGGAGACTTCTGAGTGTTTTGTGCGAGTTCCCGGCATCCTGAGCAACATTCACAATAGCACTGGGCAGCACTTGCACAGCAAAGCTAAGACCCTTTCATCCAGCCAGAGCACTGCAGGCAGACCTGTTCTGTCACCAGCGGTGAGGAGGGGACAGGAGGAGAACTGGGTGAACCTGGGGGCTTTGACTCTTCCGCTGACCAAGCAGATGGGGGCTGAGGGTACCCCGGTCAAAAGCAAGGCACTATTCGGACACACCAGTCATAACCACATGGGCAAGATGGATCCAGTGGCATCAAATGGCAGCAAGCAGCCTAGGAAGGCAGGgccaggaggaggagcagcggTGACGGGAGTCCCCTCACCGGAACATGGTTCTGACGGAAAACGGCGGAACGCGATTAAGGGTACAGGCCACAGTGCCACCCAGACCAGCTGCATCCGTCAGATCGTGCTGCTGCAGCTAGAACTGATcgaacagcaacagcagcaactgcAGAACAAGAACAAGGAGATAGATGACCTCAAAGCTGAAAAGGAGATGTTGGTGGCAAGGATCGAGCGCATGGAGCGGCGGTTACAGATGGTGAAGAAAGATGGCGTCGAGAGTCGTCCCACTCCCACTCCTCGCCGCAGGGAGTCTGTAGAGGCTGTCCCATCTGAAGGCACTGGGCAGTCTGAGGGTCAGAGTCATACCCCTCGACAAACTAATTTTGACAGAAGTGGCAAGAATCTGAAAAGGAGATTCCTTTTTCAGGAATCCACGATGTCAAGGTCCAAACGTAGGCATACTAAAGCACCCGCTCCAAAAGAAAGCCAGGCTCTGGAGGAGTCTCAGGAGGAGGTGGAGCCTGAGGTAAGGTCACCTGGTTCCTCCCTTGTAGAATCAGAAGAGCTGCCGTACATGGCTACCACTGAGATGTATCTCTGCTGCTGGCACCAACCTCCACCTTCACCATGGAGAGATCAGTCTCCTGTGCAGGAGGACACAGTTGCTGTCCCTTCTTGGCGAGAGAGCATTGTGGAACCTCTGGAGGACAAAAAGGCAGTTGATATCATGGAGAGTTTGGATGACAGTGTCTTTCTGAAGCGTCATTCAAAACTGGAGCTGGATGAGAAGAGACGAAAAAGGTGGGATATACAGCGTATTCGGGAGCAGCGGATGTTCCAGCGCCTTCAACAGAGAATGAACAGGCAGAAGGTGATTCAGGAGTGTGAACCAGAGCTGCTCTCCTTCTACCCTGAAGCTGAGGATGTGGAATCTGTAATGATCACTCCTTTCTTGCCAGTGGTGGCGTTTGGCAGGCCTCTGCCTAACATTAAACAACAGAATTTCGAAATACCATGGTTAGATGAGCGTAGCCGTAGCCGACAAGAAGTGTCTAAAAAGAAGACGCCCCATCGGACCTGCCGCAAGTGAAGCAGTCCTCTTTGAGTGAGCACACAATGTTAAGAAGAGGCTGAATCAGTTCGACTGTCCTGTGCTGTATTCTGTGTGCTGTAGGATCATCTTGGCAATGTTTTACATAGTTGATTGCCCTGAAGGCACCTTCAGTCTTTAAAGAGCTGCTCCTGGCTGAAGCCCGTTTGGCACTCTGAATGGCACACCAGCTACAAGATGGATGAAAGCAGAGCTGTCAAAATTTCATACTCATTGTTGCACTGCAAAATGTGACATTGCTGTGTTCTGGTTGCTTTGGTATTTTCCCATGCAAGTTAGCTTTTAAAAGTGCAGTATGGACCAAAACTCACGTCATGATCAAATGCAGTTTAAAAGAGAATGTTATTTAGTCAgtgtttttgcatttctgttCATTGTGAATGGGTGACTTCTAAAACAATATAGTGTAATATCTTGTAACATAGTGTTGATTCtgcaaataaatgaaagataaTCTAATGCGcctaaagaaaatatttcaggtattaaaatatcttaaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246996 lncRNA upstream 29641 9864977 ~ 9883127 (+) True G208504
TU247001 lncRNA upstream 53886 9846084 ~ 9858882 (+) True G208507
TU246950 lncRNA upstream 164758 9746285 ~ 9748010 (+) True G208472
TU246951 lncRNA upstream 164758 9746850 ~ 9748010 (+) False G208472
TU246862 lncRNA upstream 173902 9737009 ~ 9738866 (+) True G208415
TU246973 lncRNA downstream 122308 10039409 ~ 10061965 (+) False G208488
TU246974 lncRNA downstream 122308 10039409 ~ 10061965 (+) True G208488
TU246978 lncRNA downstream 122308 10039409 ~ 10061965 (+) False G208488
TU247237 lncRNA downstream 304182 10221283 ~ 10221539 (+) True G208700
TU247238 lncRNA downstream 308482 10225583 ~ 10226503 (+) True G208701
XM_026916952.2 mRNA upstream 19272 9886784 ~ 9893496 (+) True si:dkey-225f5.4
XM_034310316.1 mRNA upstream 19272 9886802 ~ 9893496 (+) False si:dkey-225f5.4
XM_034310315.1 mRNA upstream 32883 9840890 ~ 9879885 (+) True igf2bp1
XM_026916900.2 mRNA upstream 85759 9814084 ~ 9827009 (+) True ube2z
XM_026916012.2 mRNA upstream 101187 9806798 ~ 9811581 (+) True atp5mc1
XM_026916963.2 mRNA downstream 861 9917962 ~ 9926203 (+) True casc3
XM_026916700.2 mRNA downstream 27205 9944306 ~ 9987773 (+) True rapgefl1
XM_026916863.2 mRNA downstream 275703 10192804 ~ 10195206 (+) True LOC113528352
XM_026916903.2 mRNA downstream 297944 10215045 ~ 10222874 (+) True LOC113528384
XM_026916301.2 mRNA downstream 381786 10298887 ~ 10341715 (+) True helz
TU246534 other upstream 849453 9061565 ~ 9063315 (+) False nupr1b
XR_003402909.1 other upstream 1010091 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 1904501 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 2059259 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 2613084 7299613 ~ 7299684 (+) True trnac-gca_21
XR_003402918.2 other downstream 27205 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 432301 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 455314 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 495883 10412984 ~ 10417881 (+) True G208781
XR_003402977.1 other downstream 1619946 11537047 ~ 11537165 (+) True LOC113528662

Expression Profile