Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026917270.2 |
| length | 569 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 5 |
| gene id | rpl27 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 2187365 ~ 2195026 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02901 | RP-L27e, RPL27; large subunit ribosomal protein L27e |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU241570 | lncRNA | upstream | 1201 | 2183237 ~ 2186164 (+) | False | rundc1 |
| TU241566 | lncRNA | upstream | 28082 | 2154436 ~ 2159283 (+) | True | G203955 |
| TU241543 | lncRNA | upstream | 178759 | 2008401 ~ 2008606 (+) | True | G203935 |
| TU241516 | lncRNA | upstream | 200150 | 1919023 ~ 1987215 (+) | True | G203913 |
| TU241496 | lncRNA | upstream | 246595 | 1917205 ~ 1940770 (+) | False | ppfia3 |
| TU241577 | lncRNA | downstream | 3087 | 2198113 ~ 2198333 (+) | True | G203965 |
| TU241588 | lncRNA | downstream | 29523 | 2224549 ~ 2227164 (+) | True | G203973 |
| TU241581 | lncRNA | downstream | 63456 | 2258482 ~ 2260374 (+) | True | G203967 |
| TU241612 | lncRNA | downstream | 193958 | 2388984 ~ 2392499 (+) | True | G203996 |
| XR_004579376.1 | lncRNA | downstream | 328962 | 2523988 ~ 2524878 (+) | True | LOC117598836 |
| XM_026917227.2 | mRNA | upstream | 2775 | 2177683 ~ 2184590 (+) | True | rundc1 |
| XM_034310161.1 | mRNA | upstream | 12754 | 2130528 ~ 2174611 (+) | True | grna |
| XM_034310053.1 | mRNA | upstream | 73296 | 2092559 ~ 2114069 (+) | False | bcat2 |
| XM_034310052.1 | mRNA | upstream | 73296 | 2094377 ~ 2114069 (+) | True | bcat2 |
| XM_026916139.2 | mRNA | upstream | 95912 | 2084552 ~ 2091453 (+) | True | hsd17b14 |
| XM_026917021.2 | mRNA | downstream | 3723 | 2198749 ~ 2212411 (+) | True | slc25a39 |
| XM_034309962.1 | mRNA | downstream | 44583 | 2239609 ~ 2258256 (+) | True | nbr1b |
| XM_034309964.1 | mRNA | downstream | 44583 | 2239609 ~ 2258256 (+) | False | nbr1b |
| XM_034309963.1 | mRNA | downstream | 44584 | 2239610 ~ 2258256 (+) | False | nbr1b |
| XM_034310177.1 | mRNA | downstream | 427144 | 2622170 ~ 2691714 (+) | True | LOC117598986 |
| XR_004579364.1 | other | upstream | 31516 | 2155599 ~ 2155849 (+) | True | LOC117598829 |
| TU241504 | other | upstream | 301887 | 1883075 ~ 1885478 (+) | False | ccndx |
| TU241220 | other | upstream | 596290 | 1561594 ~ 1591075 (+) | False | syt3 |
| TU241205 | other | upstream | 831038 | 1353334 ~ 1356327 (+) | False | kmt5c |
| TU240880 | other | upstream | 950753 | 1220512 ~ 1236612 (+) | False | paqr4a |
| TU242114 | other | downstream | 808646 | 3003672 ~ 3012859 (+) | False | pyya |
| TU242330 | other | downstream | 997686 | 3192712 ~ 3200133 (+) | False | LOC113527909 |
| TU242670 | other | downstream | 1771732 | 3966758 ~ 3986284 (+) | True | limd2 |
| TU242671 | other | downstream | 1771732 | 3966758 ~ 3986284 (+) | False | limd2 |
| TU242672 | other | downstream | 1771732 | 3966758 ~ 3986284 (+) | False | limd2 |
