RNA id: XM_026917272.2


Basic Information

Item Value
RNA id XM_026917272.2
length 3252
RNA type mRNA
GC content 0.40
exon number 4
gene id zgc:153733
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3221273 ~ 3231214 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGAATTACTCTGTAACCACTACACCAGTGCACTCCATAGTGTGTGACGCAATAGCGTTCTAcgccctacatagtgcactagatagtcAGTAGACAGCTATTCGGGATTCGGCCAGGTGGAGTCACAACTCCGtaaaTTCACATGATCCAAGCAGTGCTGTGATGAAGATCCACCGGAGAATCTTAACCCACTACCTGTCCTGCACCTCACCGGTGGATAAAGAGGGATATCTTTATAAAAAGAGAGGGAGAAACACATCGTACCTACGCCGCTGGTTTGTCCTGAAGGGGAACCTGCTGTTCTATCAGGAGCGTCCGGCTGACCGCGGTCTGCTCGGTGTGATTGTGCTCGAGGGTTGCGTCGTTCAAACAGGAGAGTCAGACGTCTCGTTCTCTCTGGTGTTCACTGGCCCAGGCCTTCGCTCATATCAGCTCACCGCAGACGATCAGTCGAGCCAAAAGAGCTGGGTGAAcgctctcctgtcagccagccACATCTACATCTCACTGCTCGTCAGAGACCTCGCACACCTTTACCAAGaagCTAAAGAAGGGAAAAGCCTCGGCGATTCTTCTCATTCTTCCACATCGACAGATTCCTGTGTGAAAATGTCCAGCTCTGTCATCGCTGCTTTCTACGCAGGATCACCGTATTTGGCTCAGTGTTCTGACCCGACATACAGAGAAACGAGAAGCTACAGTGCGAGCAGCGCCTACCCTGGTCACCACACCTACCATGCTCCATCTGTGCCAATCAGATCGGCTAATAAACGACCACCAAAACACTGGCCCAAAAGAAATGCCCATGTCACACCTCTAAACGGGCCCGCCCCTAAGTACGGGGAGTGGCCTTTAGTGGGATTCGACCCGACGGACGAATTCGTTAAACTGCACGAGTATTACGGAAATGAGGTGAAGCAGGTGagagctgattggctgaagaaGAAACAGCAAGAGGCAGGCCATATTGAAGAGGATCTTATCGATCTAGGGTGATTTAACTTATCTGGATTTCTCACACACCTGAACTGTCTCAGTGTGAAATAACAGATTTTTCAATGATAAGAACTGCATACAGTGTCGTATTAATGTTTGGTAACCGATCCACTTTGATTTTTAGACCAAGCTGTGTATGTCCTCTCTTTTATTCTGCGCGTAATGAttacagaacattttaaatactGCAGATGAGATTCAGCTGAAGTATTCTCAGGCAACAGAAAAGAGAAGGTGATACTGAGGTAGTATCTAAGGAAGTGAGTAGAGATTCTAGTTGCGCTGTGACTTTTACAGTAAATGATCGTGAagattttctctcttcctgttcTGAATGCCTCACCGCACTCCACTTCTAGATTTCTGTTCTCAAAACAGAACAGGAAACTGAAAATGCAAAGATTGACCAATTTAAACAAGGACACAAGTTAGTTCATTTTCCATCTTACCCCAAACTATAGTAGACAAGCCAAGAAATATCAGACGCAATTCGGCTGATGACACAATCACAATGTGATTTTTATTCCTGGTAACGCTTTTTCATGAAGGTTCCCTTAACTggcattatttaacacattagttAACGTGAACTaaccatgaacttcagcattaatacaccatcaGTAAGATTAAGAAAGTAACTAACACCTGCAGTACATAACATGCAGTGAGTGACGGCATGATGCAAATGCGTAAATTcaaagtgtacatttttaagGGCAATCCATGAAGCGATGTCAGGGGTCCAAACAAGGCTCAGAGCACCAGCAGGCAacattaatacagaaaaaacagGTGAGGGTCAAAACCTGGAAGATATACAAATTTCAGAACATGACATGGacttaataagacaataaatgCATGATAATACCTCACAAAAATACTGATACAAgagggtataaatagacaaacaaatcAAGGACTGAACATGGAACAGGTGATCACAATAGGGCAACTAACCAATGACAGGAACGGagtggagacaggaccaaaacagacacaaagacacatggCAATGTAAACTAAATTACATGACGTGAAAACAGCACTCGTTGGGCTCGgaactgagagagaaagggacTTTCTGACacattaattgatttttttttaaaaataataatatataaatatgccaAATAATCAATACCCACATTAACCAATGAGTAAAATTAAGCACGCAGTGACTGACAGGAACACCTTAACGGACATGTTCTCGGTTGTTAACTGGCAAAACTGATGCTGAGGCTGAAgcaagttttaatatttatacctGAGTTCAGAAAGTTATCAACATTTACATTCTGAACATGCTGTAATTGAATTACAATTGAATGTAGgtgtatttcattaacatttaaacaaacatcagtTAGGACATGTGGTAATTTAGTTAATTTATACTTATGGTTTAttaattctgaaattcatggcttgttaatgttaatatattcCAGGGAGTAACTACAGTAATCACTGTAGATGTAGCAAATATGTACATACGAACCAAATATGTACATATAGTCTACAAATGGTGTTCATGATCTATATATAGAGCCGTCCAATGATTTAGGCATGCAGTTTGCACAGTGATAAAATTGGTAGCTATAACCTTTAATCAATTGTTATTACCCTTGTAGCTTGAAACAAACTTCAGCAAATACGTCTTGGATGTTTGACTACATAAAGGAAATTacatttttggccaaaactCTCCTTTAACTAAGTTTGGACTTGCTCTACATAACAGGTACCACTGATGCCAGAATCCTTTAATCTACagtattaaatttattaaaccaGTCCAAACTCAGAACCCTTCTGTTCCTGTAATTCAGTATTACTGAGAATGTTGATGCTAAAGGTCATTATAGAGGactttctcatttatttaaacatgaatATTACAGAATAACCATAGAGTCGCCTCTCCATTGAGCTTATTGCAGGTAAAATACCTCATATTTGACGCTTGATAAACTTTTATACGTGTATCATTAAGGTTTGCTTCTCTGCTTCTGCTTCACATTCCTTAATCTGTAGCTTTATGCCTTTCTTGATCAGACTGTTATTGAAAGATTGaccaatatatttttatattatagtgtatttttttgtttgttttacaataATGTAATTGTCATCATGTGCAGCTCAGTATGAGCTGTATAAGTATAACTGGCTGTTAACGTCTGAAGTGTAAGCCATAGCCtgtatataataacatttatggTGCAAATAAAGTGTGAAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242361 lncRNA upstream 4747 3215787 ~ 3218884 (+) True G204633
XR_003402893.2 lncRNA upstream 23576 3192704 ~ 3200055 (+) True LOC113527909
TU242118 lncRNA upstream 150905 3064905 ~ 3072726 (+) True G204417
TU242111 lncRNA upstream 187468 3034271 ~ 3036163 (+) True G204410
TU242013 lncRNA upstream 320736 2902229 ~ 2902895 (+) False LOC113528221
TU242421 lncRNA downstream 122084 3353298 ~ 3356906 (+) True G204678
TU242422 lncRNA downstream 168555 3399769 ~ 3403347 (+) True G204679
TU242522 lncRNA downstream 303075 3534289 ~ 3587548 (+) False glyr1
TU242534 lncRNA downstream 339549 3570763 ~ 3573520 (+) False glyr1
TU242528 lncRNA downstream 356688 3587902 ~ 3590031 (+) True G204771
XM_034310180.1 mRNA upstream 40728 3177549 ~ 3182903 (+) True zgc:113090
XM_034309925.1 mRNA upstream 49346 3159933 ~ 3174285 (+) True kat7a
XM_034309926.1 mRNA upstream 49346 3159933 ~ 3174285 (+) False kat7a
XM_026916304.2 mRNA upstream 77449 3088362 ~ 3146182 (+) True LOC113528048
XM_026916120.2 mRNA upstream 192467 3014983 ~ 3031164 (+) True mpp2a
XM_026916969.2 mRNA downstream 4825 3236039 ~ 3241987 (+) True mylpfa
XM_034310181.1 mRNA downstream 44834 3276048 ~ 3289441 (+) True LOC117598988
XM_034309687.1 mRNA downstream 59348 3290562 ~ 3297596 (+) True LOC117598751
XM_034310007.1 mRNA downstream 86109 3317323 ~ 3352852 (+) True LOC113528556
XM_026917067.2 mRNA downstream 239239 3470453 ~ 3477325 (+) True mpv17l
TU242330 other upstream 23498 3192712 ~ 3200133 (+) False LOC113527909
TU242114 other upstream 210772 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1067782 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1338153 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 1632556 1561594 ~ 1591075 (+) False syt3
TU242670 other downstream 735544 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 735544 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 735544 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 735544 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other downstream 739965 3971179 ~ 3971250 (+) True trnae-cuc_26

Expression Profile