RNA id: XM_026917276.2


Basic Information

Item Value
RNA id XM_026917276.2
length 3245
RNA type mRNA
GC content 0.45
exon number 14
gene id csf2rb
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9300101 ~ 9312782 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acactctcagaaaaataaatgcactcaAGGAACTGTCTACAGTTAAGCCAGTCCACATACACctattaacagatttttttttgagtctCAGTAATATGGATTAACAGAATTCGTGAGAGGTTCTCACACAGGCCGTaagattttgaaattgtgaggtcagggctctctgGTGTCCCACTCCAAATACAATGTTCCCCTTGAGGACACTGCTTATTGCAGCACTGCCTCTGCTGGTCCTGAGCTCCAACCCTGAGCAGTGCTCTTCTCAAACCTCTACTCATCACAATTCTCCTATGCTGGCATCGCTGCAGTGCTATAATGACTTCACCACTCAGATACGCTGCACCTGGGAGGTAGAGTCACACACAGACTTCCTCGTGCCAATCAGCGATGGAGAACCGTGTATCCCTGATGATCACAGTAAGATGCAGTTTAGTGGAAATCGCACCCGGAGTTGTGTCTATAATACCGAAGTGTTTAGCATGGGCAGTCATGTCTTCTTCTTCAACACATCCTGTCCTTCTAAAGTGACAACTTTTAATATAGCTGCACAAGGCAAGGTCCTGCCCCCAACTAAATTCTCCGAGAAAAAAGTGAATGGGAGCAACCGACTACTGAGCTGGAGCAGCCCGTATCCTCCCTCATCCCCTCTCACACTAAACCTTACCTACCAGCTCAAGTACAGAAGACATGAGCATGAGTGGATTGTGATAGATGATATCACTATCACAGAGTTTGAGATCGAGAGTCAGAACCTCTTGCCAGGCTACTCATATGAGGCCAGGGTGCGAGCCCGGGGTCCTGTAGGCCTGTGGAGCAGCTGGAGCCCCAAAGTGGTCTGGATGACTGAAGAAGAAGGTGTCATTAACCTGCAGTGTGTAATTAAGGAAGGAGGGGTGATGTGTAGTTGGCAGGTGAAGAAAAGGCAGGCCGAGTTACTCTCGTATCACCTGTGTGGCCACACCAATGGAACAAGCGTGAAATGTAACCACTGTAGCAGTCACACTGAGCGTCCTCACTCTGGAACCTTTCtaaattttacatgttcattgAATAGCTCTGAACCTGAGCTGCTGACCATGGAGATCAGAAGTGTACGAAACGCCAAAGAATTTAGTAACCCTGACAACATTCAGCCCCCACGTCCATCCCAACTTCGGGCGCATAGGGAGGATGGTGTTTGGAAGCTGAGCTGGGCCCGACCTAGTGTTAATGATAAACTCACACTCTTCTATGAGGTGTACCTCGAAAGCAATGACACAAAGAATAAGGTGGAATTCAATCTCTCTGAGGCAGATCTCAGTTCAAATGTTCCCACCTCCCACCTGTTGTCCTCTACAAGATACATGGCTAGGGTGAGAGCACATCCTGGCCGTGACTATGCTGGACGACCCTCTGACTGGTCTGATCCCACGTACTTCACCACTGATCCAGctcCCTGGATCAACACCATAATTTACCTCTTGATAGCTACGTTAGTGGCCGTGCTTTTCATCATCTTGTATAATGCCCTTCCAGCCTGCCACAGgagagtgGTACTGTGGAATGTATCCATTCCCTCTCCCATTAACAGCAAAGTCCTGGGGGACATGAGCAGTAAGAAATTTCTTGCTGGTGAGGCCAATCCATACACTAGCAATGAGAAAACCTGCGTGTTCATCATACAGACCTCAGATAACCCTATCATCTGTAAGGGCAGtATCTCTGAGTACCCGCTCCTGACATGCAGCAATGACAGTGACATGGGCCTTGGCATGAGTGAATCAGGATGGCCACAAGGCTCAAGCCACTCGTCTTTATATGTAGATGGGAGCAGAATGACAGACAAATCTGGCGTAAGCTTCATTGGACCTTACATCCTCTGCCGCGAGGACTCGTCAGTGCCACCTGAAACTTCGGACACATTCTTCCCTTCCCTTTTAACTTTCGATGATGATGGAAGATACATTTCTGAGAGCCCCAAGGATTCTTTGCCAATAAAAGGAGGCTATGTTTTATCCCCTCCCAAAAATCCAACTTCAGAATGCTTAACCCCAATCGATAATCAAGCTAGTGAGAACGGAGAGCCCAGGAACTCATCCCACCCTAACGATGATCCCCCGGCATACACCCCAAGCCCAGCTGCGGTGTCCAGTGCCATTTTTTCTCACCCGTCTGGATACTGTCTGATGCCCAACATGGAGACTGTTGCAGCATGGGTGTCTGCTTCTGTCCCACCACCAGAGggcaacacagagagaaagttGCATGAGATAGGGGGAGATTCACCTGAGCGCAGCTACGTGACACTTTCTCAGCGTGGACTCTAATACATTCACTTTTAGTGATAAggccacaaattaatatattgagACCAGAAGTTAATCTTTCGGGGCAACAAATGAGGTATCTTGCCCGTGCATTGTGTAACTTGAACCTATGACTTAATATGTTGTGGGTACATCATACTTAATATGTGGCCTCTAGTTAATGATTTGGCGGGAACGGGCAAAACAGGTATTTGAAAATTCACTGTAGATGATGTGGACTAATGGTATATCCATAATGCAATGCCTGGGACTCCAGTATGTCTTTATACATCATTCCAAGATTGAAATAAAGGTTAGGTTCCAGTGGCCACAAAGATCTAATTCAATTGAATTCTCTGTCTTACTAATTTAAATAGCTGTCAGAAGTATAGTTTTTTGTGGCCACACAATTGGCCTTGAGAATCTTGACGGTGTGACGGTGTGACTTGACGGTTCTCATCTTAAAACATCAGCCTTTTTACAGTATGTGTGAACGACATAAAAATGCAAGTAGTAGCAATTTTTCTGTATCACACCATGTTGTCCAGCAGATGGCATTGCTGGTGGACTTTGTGAGACCAACATGTaacttttattctctctctgtttctgcatTATGTTGCACACTGAGTTATGTGATTATTAAAACTGTAGACCCTGAGCTACAGTTACTATACCTGCGACTATGAATGTAAGCTTTTATATAAATTACTTATATTTGAGGTTGTCCTAAGTGTTTTCTGTACTTGTGCAATGTTTAACACGAgttcaaataattaaacaatctgcatttaatacaataattttaCCAATTTATTAACTCAGATATTTGCCAAATACTCCTGTTTAGAACATGTGTTGTAATATGAAGGTCTCTGTTACTGCAAGCCACAAACTGTCTTGtctgtaaatgtactgtatgtgtatgtatacagtgtctaaataaaaatcttagaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246625 lncRNA upstream 131085 9168275 ~ 9169016 (+) True G208229
TU246583 lncRNA upstream 174311 9115188 ~ 9125790 (+) True G208197
TU246505 lncRNA upstream 252685 9045645 ~ 9047416 (+) True G208133
TU246502 lncRNA upstream 255979 9041794 ~ 9044122 (+) True G208132
TU246495 lncRNA upstream 268180 9031393 ~ 9031921 (+) True G208125
TU246759 lncRNA downstream 60468 9373250 ~ 9374453 (+) True G208336
TU246749 lncRNA downstream 62158 9374940 ~ 9375627 (+) True G208326
TU246822 lncRNA downstream 172916 9485698 ~ 9490734 (+) True G208378
TU246828 lncRNA downstream 182233 9495015 ~ 9498049 (+) True G208382
TU246850 lncRNA downstream 242830 9555612 ~ 9555814 (+) True G208403
XM_026916067.2 mRNA upstream 54317 9233003 ~ 9245784 (+) False baiap2l2a
XM_026916069.2 mRNA upstream 54317 9235479 ~ 9245784 (+) False baiap2l2a
XM_026916068.2 mRNA upstream 54317 9235480 ~ 9245784 (+) True baiap2l2a
XM_026916917.2 mRNA upstream 200860 9074969 ~ 9099241 (+) True doc2a
XM_026916138.2 mRNA upstream 236688 9061563 ~ 9063413 (+) True nupr1b
XM_034309941.1 mRNA downstream 77642 9390424 ~ 9400838 (+) False si:dkey-110g7.8
XM_026916101.2 mRNA downstream 80961 9393743 ~ 9400838 (+) True si:dkey-110g7.8
XM_026916102.2 mRNA downstream 80961 9393743 ~ 9400838 (+) False si:dkey-110g7.8
XM_026917137.2 mRNA downstream 165029 9477811 ~ 9488541 (+) True nfe2l1a
XM_026916970.2 mRNA downstream 466741 9779523 ~ 9781922 (+) True eve1
TU246534 other upstream 236786 9061565 ~ 9063315 (+) False nupr1b
XR_003402909.1 other upstream 397424 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 1291834 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 1446592 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 2000417 7299613 ~ 7299684 (+) True trnac-gca_21
XR_003402918.2 other downstream 631524 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1036620 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1059633 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 1100202 10412984 ~ 10417881 (+) True G208781
XR_003402977.1 other downstream 2224265 11537047 ~ 11537165 (+) True LOC113528662

Expression Profile