RNA id: XM_026917281.2


Basic Information

Item Value
RNA id XM_026917281.2
length 2397
RNA type mRNA
GC content 0.40
exon number 7
gene id tmem150b
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9373152 ~ 9379596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTGATCCTTCCAGCAGCATGATGCAAAAAGACTCTCAGGACATTTCTGATTCCTCAGCGGACCAGTTTTGATGTGCTGTGCTCACTGGGGACAAACGTTCTTATTCTGCGCACTCAGAATCAGCACCCAACATGGTCATCAGCTCTTGTAGGAAACAAAGTCTGATGAGTAAAACATTCTTAGACATTCTGCACGCCAGTATAGAATTTGGCTATGATTtgccatgtttgttttcttgcaTGATCCTCACCATTCTCCTTTGTCTCCTCTGAGCTGCCGAATTTATACACACCTTAATCACATGACCTATGTCTTGATGAAAAGTACGATATATGCGATCAGGTGTGGAAGCTactgaataaactgtaaataaccATGAATGCCATATGCTTTTCCGTTGCAATACCCTATAGTGCAGGAGCATTGCAAATCTATTATATCCATTAGGTAAGGATAAAAGACAACTAGGCAtcataggaaattaatcaacaacagtaTGATGTGATATGAAGCACCATTTCTATTGttattccaaagtgttttattcctagtataccacagcaaattgccaacaaaatttattattaaagaatgacccCCTCATACTTTTTTgcccatttataattacatttaaagttatgAAACCTCAAAGAaatgttatttcctgttattgcttatattgtagcagctacaaacagttgttTTCTCGCCATCCATTATagtttcctctctcttgaagttaataagcaaaaaaatgcagcttattatATTtgagagaaaccacaaagactTCCTGCGCCAGACAACCAAACGGAACAGCCTtccttctgactgttacaaagcgctgacattgaagcctccttccaaaaatgctaaatgaacatctccttagagaaaacatctcaattacacacattttttaaaaaaccagTTTATGAGGAATGTCTGCCACATTAACAGTGATATGGTATAAATCACCATTAAACCCTGAGATATTACCAGAAGTTCACCTTTTGAGAACACGGACTGTTATGACACCTTTGCATACCAACAGAAAACCAACAAACACATTTTGAATAAATCGCAGGTCACCCACTCACCTATTAATGATATCTATgtagaaaatacaaaataccattaacaaatattacaaactaTTACAAAACAACCAGGAAGCAACTGAAATAcataatatgatatatatttttatcctaCTGTGTATGTTTCTGAGCCGCATGCTTTGATTAAGGCCATTTATCCCATGCGAGTGGATGTTAAAGGCCCACTGCAGATCCCTGGCCTGTCCCTCCTGACGCCAGAGCTGTTGGTATAAAAGGCATATCTGATTGGTCCATCATGTGGACATGGGCgctacttcctgttttcctggCAGTGTTTGGCACTCTAGGCATTTGGACTGTGTTTGGTTTAGCTGTGTCTAATGAGACAGTGAATCTGACAGTCGAGTTCCCATACATCAGCACATGTGGCACGTATAACCCTCAGAGCTGTCTCTTCTCCCAGATATGCAACATCTGCTCTGTGCTAGctCTGTGGATTGTGATTATAAGGTTCCAGCAGGTGAGGGATTTGAATTGTTCGTCACGTGTTAACACAGCCAGTCTAGTTCTGGGGTTCATTTCATCTATAGGAATCTCCATCCTGGGAAACTTCCAGCAATCGGTGGTGATGGGAGCTCACTTGTTGGGTGCGTTCCTGGCATTTTTTGTGGGTCTGGCATACTTTTGGCTTCAGGTGTGGCTCACTTACCACGCAAAACCATCATATGACAAGAAGTGGGCAGGGCCTGCACGGATTATTTTCTGCAGTCTTTGCACTTGCTTGGTTCTTGTCATGACCGTGCTCCATAAAACAGGCTACCGATCTGCAGCTGCCATAAGTGAGTGGGCTTTGGTCATGTGCTTCTTCATGTTGTTCGGCATTTTCTCTGCAGAGTTCCGCCACATTGACTTCCATGAACTACACGTGCAGAACGAGGCGTTCAGCAAAAGTAGTCTTGAGTTTCCAACACAGACAAGTAATATGGTGGCACTGACTGGACACTTAACCAGCACACAAACACCCGCTGCCAAGTCTGACCCACAGTATGGATGAAACAAtgtataatattgtattgtatgggTTTATGCTGCTAATATGGACCTAATGTTATAGAATAAGAGAACTTTGGTCTTAGTGAATTTTCATGTTTTACTAAAgatgtataatttataaacCCAACCCATTCTTTCCAGCTTTGACTGATTTGTAAGTCTAGCTGCTCACATTTATTAACGACTTTGCTATCATTGATATGTTTATATCTtgttgaaataataaataaaaatacttgtCCTCATTGCCCAAGCATGTGCTGTGCTTAGCGCTGATGTCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246658 lncRNA downstream 249271 9122196 ~ 9123881 (-) False LOC113527952
TU246570 lncRNA downstream 270026 9102911 ~ 9103126 (-) True G208189
TU246536 lncRNA downstream 309645 9061580 ~ 9063507 (-) True G208158
TU246531 lncRNA downstream 342174 9030525 ~ 9030978 (-) True G208153
TU246529 lncRNA downstream 348169 9024761 ~ 9024983 (-) True G208151
XR_004579419.1 lncRNA upstream 62390 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA upstream 62390 9441986 ~ 9446050 (-) True LOC117598997
TU246838 lncRNA upstream 115027 9494623 ~ 9505750 (-) True G208391
TU246919 lncRNA upstream 350273 9729869 ~ 9731447 (-) False hoxb8a
TU246954 lncRNA upstream 366900 9746496 ~ 9748039 (-) True G208473
XM_026917139.2 mRNA downstream 37522 9321259 ~ 9335630 (-) False pdgfbb
XM_026917140.2 mRNA downstream 37522 9321259 ~ 9335630 (-) True pdgfbb
XM_026917141.2 mRNA downstream 42787 9321259 ~ 9330365 (-) False pdgfbb
XM_026916054.2 mRNA downstream 87212 9247782 ~ 9285940 (-) False pvalb6
XM_026916055.2 mRNA downstream 101250 9247782 ~ 9271902 (-) True pvalb6
XM_034309943.1 mRNA upstream 1078 9380674 ~ 9391360 (-) True adsl
XM_034309942.1 mRNA upstream 1078 9380674 ~ 9390750 (-) False adsl
XM_034310057.1 mRNA upstream 22089 9401685 ~ 9412610 (-) True LOC113528600
XM_026917248.2 mRNA upstream 22089 9401685 ~ 9408661 (-) False LOC113528600
XM_026916595.1 mRNA upstream 35095 9414691 ~ 9415029 (-) False prr15la
TU246677 other downstream 169512 9196496 ~ 9203640 (-) False dnal4a
TU246678 other downstream 169512 9196496 ~ 9203640 (-) True dnal4a
trnav-cac_10 other downstream 185560 9187520 ~ 9187592 (-) True trnav-cac_10
TU246334 other downstream 659834 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 1088560 8284474 ~ 8284592 (-) True LOC113528661
TU246802 other upstream 30208 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 30208 9409804 ~ 9419584 (-) False prr15la
TU246806 other upstream 30208 9409804 ~ 9419584 (-) False prr15la
TU246804 other upstream 34005 9413601 ~ 9419584 (-) True prr15la
XR_004579423.1 other upstream 86884 9466480 ~ 9474478 (-) False copz2

Expression Profile