RNA id: XM_026917288.2


Basic Information

Item Value
RNA id XM_026917288.2
length 1773
RNA type mRNA
GC content 0.49
exon number 2
gene id kcnj12b
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7058969 ~ 7067348 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAGCAGGAGGTGTGGTTTAATCCTCACTCCCACAGAAGCTGACGGTTGTATGTGCCACTGCACTGAAGTAAGGTCCTTGTGTCTTGTGCAGCGATTGGTGGAGAGACAGAGGCCTGGTATCCCAACCACTCATTGTCCTGACCGGGCCGAGTGGCATGAGTGTGGGAAAGACCCCTCGCTACAACGTTGTGTCATCGTCAGAGGAGGACATCCATCACCACGGCAACATGCCTGCCCTCGGCAATGGCTTTGGAAATGGTAAGATCCAGACGCGGCGAAAGCCACGCACCCGCTTTGTTAACAAAACCGGACAGTGTAACGTCAGCTTTTCACACATGGAAGAGCAATCACAGCGCTACTTGGCCGACATCTTCACAACATGTGTGGACATCCGTTGgcgctggatgttttttctcttctctcttgctTTCATTCTGTCCTGGCTGGCGTTCGGTTTCATCTTCTGGCTCATTGCCCTTGTACATGGTGACTTTGACAGAACCTCCAGTGAAGAGTTCACACCCTGCATCATGCAGGTCAACAGTTTTGTGGCAGCCTTCCTGTTCTCAGTCGAGACCCAGACCACAATTGGTTATGGCTTCAGGTGTGTGACTGAAGAGTGCCCACTGGCTGTATTTATGGTTGTTGTTCAGTCCATTTTGGGTTGCATCATTGACGCTTTCATGATTGGTGCCATCATGGCCAAAATGGCCCGACCCAAAAAGCGTGCACAGACATTGCTATTTTCGCACAATGCTGTCATAGCTATGCGTGATGGAAAGCTGTGCTTGATGTGGCGTGTAGGAAACTTGCGCAAAAGTCACATTGTCGAGGCCCACGTACGAGCACAGCTGATTAAGCCAAGAGTGACGGAAGAGGGCGAGTACATCCCACTTGACCAGATCGACATCAACGTTGGCTACGACAAAGGCATCGATCGCATCTTCCTTGTTTCTCCTCTGACCATCATCCACGAGATAAACGAGGAGAGCCCGCTCTTTGGAATCAGCAAACAGGACCTAGTCAATGAAGACTTTGAGATTGTGGTGATCCTCGAGGGCATGGTCGAGGCCACGGCAATGACAGCTCAGGTGCGCAGCTCTTACCTGGCCAACGAAATCTTATGGGGTCATCGCTTTGAGCCAGTAGTGTTTGAGGAGAAGAACCACTACAAGGTAGACTTTACGCACTTCCACAAGACTTATGAGGTGCCCTCCACACCACGCTGCAGTGCCAAAGACATTGAGGACCGCAAGTCACTGCTCTCCAGTGCTAACTTCTGTTACGAGAATGAGTTGGCATTCAgcagggaggaagaggaggaggaagatatAAGGGGAATTTTGGGGACTGAGATGGAAACCCTATCAGCCAGCCTGAACTCTGACCAGAGATCACACCATATAGAGTCCGAGATATGATCTCTGACACGACTGATCCTTGACATTCACCTCtagagaattttattttaatgtagatCCAGTCTGTCCCTTTAGTTTTGGCTTGAACTGACAGATACAAAGCAAAGCAAGTGCCACTATGAACCACTGCTGAATTAGTGCCATGGTGTAGTCAAGGGCAATTCATGTTCATGACTGTTGCTGGATGGCCTTCCAGTAGGAAAACTTGAAATAGGATTCCTTGTTTCATGCTGTAGTTTGAAGTGATAGCTTTAAGTGATATCATAATGCAATACCAAGCTATCCTGGGTGCCAAATTGGTTCAGACATCTGCTAGGTACTTTTGGTACCTTCTCTTGGTTTTGTAGAAT

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245005 lncRNA downstream 230823 6826368 ~ 6828146 (-) True G206923
TU245006 lncRNA downstream 233209 6824896 ~ 6825760 (-) True G206924
TU244981 lncRNA downstream 411155 6646097 ~ 6647814 (-) False stat5a
TU244696 lncRNA downstream 712606 6273816 ~ 6346363 (-) True G206649
TU244662 lncRNA downstream 854773 6203312 ~ 6204196 (-) True G206628
TU245188 lncRNA upstream 39814 7102248 ~ 7102389 (-) True G207057
TU245372 lncRNA upstream 114098 7176532 ~ 7176755 (-) True G207198
TU245396 lncRNA upstream 164951 7227385 ~ 7227664 (-) True G207221
TU245401 lncRNA upstream 175239 7237673 ~ 7237881 (-) True G207226
TU245403 lncRNA upstream 177807 7240241 ~ 7240907 (-) True G207227
XM_026917093.2 mRNA downstream 56789 6980540 ~ 7002180 (-) True slc6a16a
XM_034310252.1 mRNA downstream 57049 6980540 ~ 7001920 (-) False slc6a16a
XM_034310251.1 mRNA downstream 57106 6980540 ~ 7001863 (-) False slc6a16a
XM_026917020.2 mRNA downstream 80836 6954113 ~ 6978133 (-) True slc17a7a
XM_034310098.1 mRNA downstream 114941 6937554 ~ 6944028 (-) True zgc:55558
XM_034309697.1 mRNA upstream 72903 7135337 ~ 7146912 (-) False LOC113528017
XM_034309696.1 mRNA upstream 72903 7135337 ~ 7146912 (-) False LOC113528017
XM_026916245.2 mRNA upstream 72903 7135337 ~ 7146912 (-) False LOC113528017
XM_026916244.2 mRNA upstream 72903 7135337 ~ 7146912 (-) True LOC113528017
XM_026916930.2 mRNA upstream 155148 7217582 ~ 7225228 (-) True rpl19
TU244626 other downstream 863973 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 1097919 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 1097919 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 1107972 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 1217492 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 208472 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 209821 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 210623 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 211872 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 256169 7318603 ~ 7321962 (-) True G207231

Expression Profile