RNA id: XM_026917289.2


Basic Information

Item Value
RNA id XM_026917289.2
length 3620
RNA type mRNA
GC content 0.46
exon number 7
gene id glis2b
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16974721 ~ 17038944 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGGGAGAGCCGAGCACGGCCCCCGTCGACGGGGCGGagcagtgcgcatgcgcggaGCGGGCAGACTGGGAGCAAGTTTGGGTGAAGGAGTCAGGGCCAGTGTCCGCTCCGCACCGGGAGGGAGACACCGCACACGGGCTCGAGTCCGTGGGGGGGGGGTTGGCTGATACCGCCAGCTTAGTGCGTTATTGCCTCAGCAAGACAAGAAAAACAACGAGGAAACACTATAGAGGAAAAACGTTTTAAGGAGATATTATCTGGACAAGACATCTgttctttctccctcccttAAGACCTTCAGGAGAACGACCACCCAAAGAAAATATCACTTGACCAAGCTTTGCTAATACGCGATGCACCTTGatcctcagaaaaaaaatcgaCAACGGTTGTTTTTTCTTATGACCTCCGGTACTGGACTTCAACCTGAAGATTACGGACACTGTTTCAAGTGTTGACACAGTTAGGTTCTCGACTAAGAGTAATAATGTCAATCCTTAAAAGTAACGTTATCTAGGCTGTTTGTTGCCCTATTTCTTTTGTCACGGTCGGCTTTTTTCACGGTCGGCTTTTTCTTGAGCCTTCTATTAAGCTTCTGCGCAGTTTTCTCCTTATTTTTGTTGCTCCTGTCTGTTTTGTAACGACAATGATCTGACAGTAGACCGCTACAGAGCCAGATTGCTAAACCGTGACGCGACGTGTATTCAGGCGTAAAGAGTAACCCGATTCACCGACGGAcaattataaaaatacattttttttaaactaaacaaAGGAATTTGTATAACCACTCTAATAGGAAAGTTTTACGACGCTTCGAGTCGAAGCCAGCTCGACAATATTGATTTCTCAGTTTCTCCAAAGGTCAGAGGCTCTGGGCTGCATCCATGCTTTCATTAGATGAGCCACTGGACCTGAAGCTGCCCAGAGGGCACATTAATGGGCGGAGCAGAGGCTCCAAGTCACCGCCCACTCTTACCTCCTCTCGGATCCATACCAAGAGGGTTGGGCATCTGCCAGTTGCTGATGATGAGACAGCGGATACTGTTCCAGCCTCCCCCCACATAGGTGTACCCATGGTGCCCCAGGAGAAGCCTGAACTCCGCACACCTCCTGCAGTGGACCTCAGTATGTCTCCGTCCTCTCGTCACACACCCTGCTCCCCTGAGCTCACTAATGGAAATGGCTCCTCTCATTTGTTCTCAGGGGACTCTGCTCACATCCGTTATGTTGAGGGAGGGGCCCCTTCACAAGCCTTCCAGTTCTTTTTGCCaattggaggaggaggagggctCCATTTGCCATCCTCAATGTTTATTGGCCAGCCCAAGGACAAAAGGGCCTCCCCTGAACTTTCAGGAGACGAACAGCTGTCCTGTCGATGGAAGTGCCAATTGCTTTTTGACTCCTTGCAAGATTTAGTGGACCATGTAAATGACTGTCATGTAAAGCCTGAGAGGGATTCTGGGTATTGCTGCCATTGGGAGGGTTGTGCACGCAAAGGACGCGGCTTCAATGCGAGGTACAAAATGTTAATCCACATTCGTACACACACCAATGAGAAGCCGCACCGCTGTCCTACCTGCAACAAGAGCTTTTCACGTCTGGAAAACCTCAAGATCCACAATCGTTCACACACAGGTGAGAAGCCCTACATTTGCCCTTATGAAGGCTGTAATAAGCGCTACTCAAACTCCAGTGACCGCTTCAAGCACACCCGTACGCACTATGTTGACAAGCCGTACTACTGCAAGATGGCTGGCTGTCTGAAGCGTTACACGGATCCAAGTTCTCTGCGAAAGCACATCAAGGCACATGGGCATTTCGTGGCTTCACAGGAGCAGCAGACAAGCCCAGGAGGGGGGGTTGGAGGACGAGGAGGGGGTGGGGGCTCACCCGTGCTGAAGTCGTCTCACGTCACAGGGAAGGAGTCTGAGCTGAGCTACGCCCATATCATCCTTCCAAGTGCAGCAGCTGCTCTCCTAGGCACCTCTCTGCCCTTGTCTCCTCTGAGTCCTCGACCCCTGGACCTGAGCATGCTGGGAAGTCCCAGTTCACCTGTCCTGTCCTTCAATGGCATGGCCAAGTCACCGTTGCTGCCCCCTGCCTTCTCGACCTCAGCATTTGGCTTGCCTGTGGTGCCCGTGTTGTGCTCAGATCACAGAGGACAAGCAAAGGGCAGTTCTAGAGTGAATGAGGGTGAGGACGAAAGCCCTAGGAGCATCCTCAACCTCTCCACAGGAGCGTCCCATGACCCCTTGTCCTGGGTCGTCATACCTTCAGGCTCTTTAATGTTGAAGCCAGCTGTGGTCAACTGAGAAGGATCCTCTAATCATTCCAGAGGGAAGGAAGTGGGGAAAGGGGCTGATTTTCCGTTTTCATAAATTAACAACTGTCTACAGCCCTCTGATGCGACATATCTACCCATTAATTTCGAGCATTGTCATTTTAGTTTTGCATCTGTTCATTACCAAAGGCACGTTTCCACTGACGTTCCAAAATCTTTTTAAGAAACTAAAGGGTTCTATAATGATCATGTTACTGAATAAGTGAatactgtttaatgttttaaccACACTGCAAAACTATGACCATGTAACAATGACACAGCAACAGAGCGAACACAGAGCAAGCTGAGATTTACATCAGCCTTTATTGATTTTGCCTCACAGTAATATAGTTTTTCAAAACCATCAGACAAATTTGTATGCTAAACTTGCCATCATCAGGCCACTAAAATGGTGTATAATATGCACTGCTGCATTTTGTTACGGACCATCCTCTGAATAATATGTAACTAGTTTTAATTTGAGCTTAAACATACAAGGACattgtataattttaaatatgtttttcaaaCAGAAAGAATTCCTTTTTTCAACAAaaactggtttcaaaattattggtacccttacaatttatatatatgagTCTCTTCCTacaattatttttgcttttttttttttaaacgaaaggtgccaataattctggaaggTACTGCAAAACACAATTTACTGTGATTTATTGTTTGTTATCTAaagcagaattttaaaatcatggATAAAAGGGTCATTCTGTGAAATTTTTGTCTAGGGCATTTAGTACAGCCAGCTCCACACCAGTAGTTCCTGGACCATAGAGAAGTATCTACTCTGGAGACATTACAGTTCAAAACAAGCCAGTTGACTTGTTGGTTACAATGTTATCAGAAAATTCCTGGCCTGTTAGATTCATACACTaacacatgcacagatacagGGGCTTCGATCTGTTAGTTACATAGAAAAGCGCATGTGCAGTAGCTGGAGCAACCTGAATTCTTTTATTGAGCtaaaaatttacattattaacGCTATTTTCATAGCCATTTCAAATCTGTGTTGGAAGAGTCATCTAGTTGATCCAGTTCTGGTATATATGTCTCTCCCTATTCAAGTAGATAGGAGCCTGCTTATTGGCGTGGACCTTTCTACAACACAGGAACTAATATCTAGGGGTGAAAGCATGCTTAAAAACTTCGTTAAAAGAGTGGAAACGTATCTTATATGAACAGAGACAGGGTGTAAAAGATAATACCAGTGGCCCAAGGACCATCACAGGCTCTCACTCTTAGTTttct

Function

GO: NA

KEGG:

id description
K09233 GLIS2; zinc finger protein GLIS2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251619 lncRNA downstream 142502 16831968 ~ 16832219 (-) True G212463
TU251514 lncRNA downstream 210050 16761232 ~ 16764671 (-) True LOC113527915
TU251546 lncRNA downstream 284384 16681184 ~ 16690337 (-) True G212395
TU251473 lncRNA downstream 401154 16573120 ~ 16573567 (-) False LOC113528039
TU251459 lncRNA downstream 477489 16478891 ~ 16497232 (-) True G212319
TU251855 lncRNA upstream 139584 17178528 ~ 17179748 (-) True G212626
TU251866 lncRNA upstream 245556 17284500 ~ 17284707 (-) True G212637
TU251872 lncRNA upstream 253416 17292360 ~ 17292723 (-) True G212643
TU251856 lncRNA upstream 253829 17292773 ~ 17296160 (-) False LOC113528519
TU251883 lncRNA upstream 301643 17340587 ~ 17342051 (-) True G212654
XM_026917290.2 mRNA downstream 43093 16909913 ~ 16931628 (-) True vasnb
XM_026916255.2 mRNA downstream 145637 16820240 ~ 16829084 (-) True dnaja3a
XM_034310079.1 mRNA downstream 195068 16770298 ~ 16779653 (-) True LOC113527928
XM_026916082.2 mRNA downstream 209380 16762426 ~ 16765341 (-) False LOC113527915
XM_026916081.2 mRNA downstream 222653 16737941 ~ 16752068 (-) True ccnf
XM_026916073.2 mRNA upstream 142052 17180996 ~ 17277356 (-) True crebbpb
XM_026917113.2 mRNA upstream 253907 17292851 ~ 17319719 (-) False LOC113528519
XM_034310012.1 mRNA upstream 351242 17390186 ~ 17518527 (-) False LOC113528038
XM_034310010.1 mRNA upstream 351242 17390186 ~ 17518527 (-) False LOC113528038
XM_026916286.2 mRNA upstream 351242 17390186 ~ 17518527 (-) False LOC113528038
XR_003402969.1 other downstream 1502809 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 2284589 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 2453746 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 2483946 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 2945080 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 253907 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 253907 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 253907 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 253907 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 253907 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile