Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026917291.2 |
| length | 973 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 5 |
| gene id | LOC113528175 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 16832403 ~ 16971767 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0030150 | protein import into mitochondrial matrix | biological_process |
| GO:0005744 | TIM23 mitochondrial import inner membrane translocase complex | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU251602 | lncRNA | upstream | 39059 | 16869758 ~ 16927982 (+) | True | G212446 |
| TU251605 | lncRNA | upstream | 39672 | 16923805 ~ 16927369 (+) | True | G212449 |
| TU251601 | lncRNA | upstream | 52468 | 16842948 ~ 16914573 (+) | True | G212445 |
| TU251594 | lncRNA | upstream | 156291 | 16810311 ~ 16810750 (+) | True | G212441 |
| TU251563 | lncRNA | upstream | 196913 | 16769928 ~ 16770128 (+) | True | G212412 |
| TU251703 | lncRNA | downstream | 80611 | 17052378 ~ 17055807 (+) | True | G212541 |
| TU251750 | lncRNA | downstream | 138469 | 17110236 ~ 17113156 (+) | False | srl |
| TU251769 | lncRNA | downstream | 208027 | 17179794 ~ 17180253 (+) | True | G212571 |
| XR_004579348.1 | lncRNA | downstream | 304887 | 17276654 ~ 17285842 (+) | True | LOC117598773 |
| TU251783 | lncRNA | downstream | 312516 | 17284283 ~ 17284486 (+) | True | G212582 |
| XM_034309794.1 | mRNA | upstream | 3092 | 16832403 ~ 16963949 (+) | True | LOC113528175 |
| XM_034309870.1 | mRNA | upstream | 147773 | 16808875 ~ 16819268 (+) | False | hmox2b |
| XM_026916254.2 | mRNA | upstream | 147773 | 16809113 ~ 16819268 (+) | True | hmox2b |
| XM_026916118.2 | mRNA | upstream | 158391 | 16779776 ~ 16808650 (+) | False | cfap70 |
| XM_034310192.1 | mRNA | downstream | 24088 | 16995855 ~ 16997652 (+) | True | LOC113528633 |
| XM_034309796.1 | mRNA | downstream | 25599 | 16997366 ~ 16998694 (+) | True | LOC117595691 |
| XM_026917074.2 | mRNA | downstream | 95470 | 17067237 ~ 17085755 (+) | True | tfap4 |
| XM_026917225.2 | mRNA | downstream | 115517 | 17087284 ~ 17112770 (+) | True | srl |
| XM_026917226.2 | mRNA | downstream | 115518 | 17087285 ~ 17112770 (+) | False | srl |
| TU251142 | other | upstream | 821657 | 16140330 ~ 16145384 (+) | False | LOC113527983 |
| TU251011 | other | upstream | 998282 | 15918217 ~ 15968759 (+) | True | G211913 |
| trnar-ucu_8 | other | upstream | 1153710 | 15813242 ~ 15813331 (+) | True | trnar-ucu_8 |
| XR_004579399.1 | other | upstream | 3474191 | 13475828 ~ 13492850 (+) | False | zgc:158403 |
| XR_003402925.2 | other | upstream | 4778452 | 12158706 ~ 12188589 (+) | False | arhgap17b |
| TU251743 | other | downstream | 115524 | 17087291 ~ 17109275 (+) | False | srl |
| XR_004579361.1 | other | downstream | 1212252 | 18184019 ~ 18341937 (+) | True | LOC113528485 |
| TU252614 | other | downstream | 1942959 | 18914726 ~ 18919872 (+) | True | smim22 |
| TU252615 | other | downstream | 1942959 | 18914726 ~ 18919872 (+) | False | smim22 |
| TU252829 | other | downstream | 2172307 | 19144074 ~ 19145240 (+) | True | G213491 |
