RNA id: TCONS_00007698


Basic Information

Item Value
RNA id TCONS_00007698
length 1279
lncRNA type antisense
GC content 0.37
exon number 2
gene id XLOC_004038
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14693481 ~ 14695864 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caatgggctatatgcacgcaTTACTTCCGCGTTTTGTCTAAGGCCGCGGTCCAGTTTCCGGTCCGGGTGATTTTAAGCAGAGGTAAACAGTATTATGGCAGAGTCGTCAATATTTACCTGATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTTTCCGGATGTGCACTACAACACCGCAGAGCAAACTTGAGAAAGGTTTCAAGTTTTATGCGTCTTCCTACCTGTGCAATTATGAAGGTAACATTATGAGATTCAGAGCTAGAAAAGTTTGTGTGTTACTCTATCCTGGAGCGGACATCTGTCAGAAAATCCATGCCATCGTCTGCTAGTTAATAGCTTCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgCTTTGCTTTTCCAGACAGCCCATTACTCTGAAATGTGTAATTGGTGTTGTCACATGAACAATTGTTTGGCATGGATCAATTATGTGTTAAGTTCCATGAAACAGaggggtgatttatttatttatttaatacataacagcccaaatacctctctatgcacaagttaaagaagcacctgattcaagaaaacaactgattcaatgttattgtttctgttcatctgaataaaatattttttcacaattgtactttttttgacaatttttatttcaaattatatacagtgatttatattttatatgtacagtgaataaaataaaggtctttattctgaattaaaaaatagcacttagaaagtagcttaagaaatggtaatgtatattaatgttcagttttttttttacttcaaaggcaatgaaaacaaactattatttgccataaaagctcctttctttaaatgtctgcatCCGGTTGGCACTCGAGCCTCGATCAGTTTGCTAGACTGAAAATGTCAGCTACACTtttgtctttttctgtttctgtaaaattCTCACGTTTAATATCAACAACCCACCTCTTCTGTACGACTTTGTCTTTTGGAAACGTGTGGAAACTAAGGTAAGAGTTCAATTTCTGACGCTGTGTGTTGCTGAACACAGCAGTGGTAGCTATATTTGTCATATTTATGTAGCTGACATAAACGTATATAAGTGGGCTATAatggcataaaacattaagacaacTGTCCAAAACATTACTTGTTTTTATCAGTAGCGCTCCTGTTGTAGCACTGTAATGTACGATCGGCGGAAGTTGGCTCGGGGTCTTAAATTTTACCGGAAATGCGTCACGCGCCGCCGTGCATAGAGCCCAgta

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0198738 cell-cell signaling by wnt biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0003002 regionalization biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0016055 Wnt signaling pathway biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000171807

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008778 lncRNA downstream 261281 14430922 ~ 14432200 (-) True XLOC_004036
TCONS_00007696 lncRNA downstream 382244 14308897 ~ 14311237 (-) True XLOC_004035
TCONS_00008777 lncRNA downstream 382398 14308897 ~ 14311083 (-) False XLOC_004035
TCONS_00008776 lncRNA downstream 545055 14147663 ~ 14148426 (-) True XLOC_004034
TCONS_00007693 lncRNA downstream 892679 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00008779 lncRNA upstream 59041 14754905 ~ 14759080 (-) False XLOC_004039
TCONS_00008780 lncRNA upstream 59041 14754905 ~ 14759088 (-) True XLOC_004039
TCONS_00007702 lncRNA upstream 131510 14827374 ~ 14829324 (-) True XLOC_004041
TCONS_00008781 lncRNA upstream 177465 14873329 ~ 14874130 (-) True XLOC_004042
TCONS_00007715 lncRNA upstream 322274 15018138 ~ 15019527 (-) True XLOC_004045
TCONS_00007697 mRNA downstream 24455 14667066 ~ 14669026 (-) True XLOC_004037
TCONS_00007694 mRNA downstream 591323 14071689 ~ 14102158 (-) False XLOC_004033
TCONS_00007695 mRNA downstream 591350 14072782 ~ 14102131 (-) True XLOC_004033
TCONS_00007691 mRNA downstream 1075069 13616015 ~ 13618412 (-) True XLOC_004031
TCONS_00007690 mRNA downstream 1082349 13605623 ~ 13611132 (-) True XLOC_004030
TCONS_00007699 mRNA upstream 76044 14771908 ~ 14813029 (-) False XLOC_004040
TCONS_00007700 mRNA upstream 76734 14772598 ~ 14789918 (-) False XLOC_004040
TCONS_00007701 mRNA upstream 93158 14789022 ~ 14813063 (-) True XLOC_004040
TCONS_00007703 mRNA upstream 219916 14915780 ~ 14924138 (-) True XLOC_004043
TCONS_00007706 mRNA upstream 259620 14955484 ~ 15001702 (-) False XLOC_004044
TCONS_00007689 other downstream 1210694 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 1937206 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 2001790 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 2071714 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 2102185 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 1322019 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 1325065 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 1362327 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 1431518 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 1636960 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

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