RNA id: XM_026917297.2


Basic Information

Item Value
RNA id XM_026917297.2
length 2237
RNA type mRNA
GC content 0.47
exon number 12
gene id gcdhb
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13096259 ~ 13104838 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTTCTATTTGGTCCAACTCAAAACTGTCACCCCAACAAATAATGCAATCAGCGTGTCGAGTGCTTAGTGCTAGTTTTCAACCTAGCGTTCCGAAACCATGACCCTTTCAAGATGGCTGACTCACCGCGCCGCGTCAGCCACTTTGACCCAACTGACGCAACTGACCCCGGCTGACGTCTGGACGACGGTCGAACTATTTCTGGGTAAGGTTCGGAACGCTGTGCTTTTCTCTCAGCTAGCTGAAGagagCTGTCCACTATGGCATTAAGAAGAGTGTGTTGTCTACTTGGCAGGCCACAGAgatgtgtgttcacttcaggGTTAAGAGCTCAGGGCACTGTAGCACACGCTCAGAGAGAGGCAGAGAAGGGTGGCGAGAAGAAGCAAGTCAAAGCACCTAAAGTACAGTTTAACTGGCGTGATGCCCTCAACCTGGAGGGTCTGCTGACGGAGGAGGAGATCATGATCCGAGACACCTTCCACACCTACTGTCAAGAGAAACTCATGCCACGCATCCTGATGGCCAACAGAAATGAAGttTTCCATCGTGAGATTTTGAATGAGATGGGTGAGCTAGGAGTTCTGGGCCCAACCATTAAAGGCTACGGCTGTGCTGGAACCAGTTACGTGGCGTACGGACTGATTGCACGCGAGGTGGAGCGAGTGGACAGCGGGTACCGCTCAGTGATGAGTGTACAGTCCTCTCTGGTCATGCACCCCATCAATGCCTATGGCACAGAGGAGCAGAAGGAGAAATATCTCCCCAGACTGGCACGGGGAGAGCTTCTGGGCTGCTTTGGCCTGACTGAACCCAACCACGGCAGCGACCCTGGCAGCATGGAGACCAGAGCCAAGTACAACGCATCCAGTCGCACCTTCACCCTCACAGGGTCCAAAACATGGATCACAAACTCTCCTGTAGCTGATATTTGTGTGGTGTGGGCCAAGTGTGACGATGGTAAAATACGTGGTTTTATCCTGGAGCGAGGTATGAAAGGTCTCAGCACCCCCAAAATCGAGGGCAAGTTCTCACTGCGCGCCTCCTCCACCGGCATGATCGTCATGGACGACGTGGAGGTGCCAGAGGAGAACCTGCTGCCCAACGTGTCTGGACTCGCGGGTCCATTTGGCTGCTTAAACAGTGCTCGCTACGGGATCGCCTGGGGAGCTCTAGGAGCAGCAGAGTTCTGCTTCCATGCAGCACGTCAGTACACACTGGACAGGATCCAGTTTGGGGTGCCATTGGCCAGAAACCAGCTGATGCAGAAGAAGATGGCAGACATGCTAACAGAGATTACAATCAGCCTGCAGGCCTGTCTGCAACTGGGCAGGCTCATCGAGCAGAAGAAAGCAAGTCCAGAGATGATCTCCATGCTTAAGAGAAATAGCTGTGGGAAGGCCTTGGACATCGCCAGACAGGCACGAGACATGCTGGGTGGCAACGGCATCGCCGATGAATACCACATCATCCGCCATGTCATGAACTTAGAGGCTGTCAACACTTATGAAGGTACTCATGATATCCATGCTCTGATCCTGGGCAGAGCCATCACAGGCCTGCAGGCGTTTACTGTAGAGAAGTAAATCACTAATCCGTTGCCCAAAACATCACAGCACTTGTACTACGTAGAATGCTGCTGGCTTTGTTGTCTAATGAAAATACTGTGTTGAACTGATGATGAAGTGAGAGTGAATTTCTGACTATTGTAAGGTGTCTATTTAAGTCATTGATTTTgtcaaaatgtaattattttaagttCATCTTTATCTTCagaagacatttaaaaatatttttgtacaattACCCCTTGattttgtatataaattatGATGTCACTTTAaaagcagtgagagagaggacatGACCATTCTAAATGCACAGTAAATTAATGaagtttttaaatgtcaaaatctgaaaaaatagaaaaaaaaatgaatctagTGAACTTAAGCTACGGTGTGCAATTGTTTTGACACtgattttgttgctgttttaggATACAGATTATATTCTGACAGTGGTTTAAAAAATGAGCATATTTTGCTTAGTCTGGCAGAGTTAaaagtgttttcatttttaaattgctgtaaatttgAACCATTACATTCAATGCAGCTCACTATGGAATCAATGAATTTCTTCTGTCAATTAAAGCTAAAATGAAAGCATGAAGGGCGATGCTATATCTCAGTTGTTTGGTTTGTAAGAAAGAATTAAACTTTCATTGAAACaaa

Function

GO: NA

KEGG:

id description
K00252 GCDH, gcdH; glutaryl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249304 lncRNA downstream 522 13095520 ~ 13095737 (-) True G210436
TU249303 lncRNA downstream 782 13095244 ~ 13095477 (-) True G210435
TU249295 lncRNA downstream 17314 13077999 ~ 13078945 (-) True G210427
TU249275 lncRNA downstream 61407 13034128 ~ 13034852 (-) True G210412
XR_003402901.2 lncRNA downstream 75581 12979965 ~ 13020678 (-) True LOC113527982
TU249332 lncRNA upstream 67012 13171841 ~ 13172066 (-) True G210461
TU249463 lncRNA upstream 205704 13310533 ~ 13354585 (-) True G210570
XR_003402958.2 lncRNA upstream 264625 13369454 ~ 13372938 (-) True LOC113528601
TU249469 lncRNA upstream 285787 13390616 ~ 13395410 (-) False elof1
TU249504 lncRNA upstream 300310 13405139 ~ 13405357 (-) True G210607
XM_034309972.1 mRNA downstream 32276 13047319 ~ 13063983 (-) False ilf3b
XM_026916474.2 mRNA downstream 33517 13047319 ~ 13062742 (-) True ilf3b
XM_034309973.1 mRNA downstream 33517 13049570 ~ 13062742 (-) False ilf3b
XM_026916475.2 mRNA downstream 33517 13050233 ~ 13062742 (-) False ilf3b
XM_034309783.1 mRNA downstream 483333 12593577 ~ 12612926 (-) False pik3r6b
XM_026916922.2 mRNA upstream 105540 13210369 ~ 13220022 (-) False nfil3-2
XM_026916923.2 mRNA upstream 105540 13210369 ~ 13219073 (-) True nfil3-2
XM_026917090.2 mRNA upstream 118415 13223244 ~ 13226875 (-) True nfil3-6
XM_026917193.2 mRNA upstream 137021 13241850 ~ 13268174 (-) True LOC113528569
XM_026916221.2 mRNA upstream 285787 13390616 ~ 13395457 (-) True elof1
trnas-aga_12 other downstream 269720 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579428.1 other downstream 537046 12548829 ~ 12559213 (-) False tom1
XR_004579330.1 other upstream 290637 13395466 ~ 13399225 (-) True LOC117598755
XR_003402937.2 other upstream 899340 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 915419 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 1382992 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 1415448 14520277 ~ 14520975 (-) True G211151

Expression Profile