RNA id: XM_026936343.2


Basic Information

Item Value
RNA id XM_026936343.2
length 4133
RNA type mRNA
GC content 0.40
exon number 7
gene id b4galt1l
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21586098 ~ 21613875 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACTGAACTGATGACGTATTTTTGTTCACGCGAGCTTCTTGGAGCGCGAGGCGTACCTCATCTCCCAGTGTAACGGGAAGCAGCGCGCCCTAGAGCGCATTACGACGgcttattttctcttttataaCATTCCATggactaatatatatatattttttttcttctgtcccCTTCACATTTGGATACCGTGGGGTTCTTTTGAAAGCTGTTGGAGAACCGTAACGAAAAGGAGGACAAGTTGTCTGAAGAAGAAGCGGACTAAAGTTCGCTAAAGTCACGAGTAacttagctaagctagctagtttagcCGAGCCGAGTGAGCATGCTAACGCTAATGAAGCCCTGACatgtcactttttttaaaaagaaacagcacATATTATGGTCATGGGCTTTAgaaatttccagaaaaaaatcGAGTAAcgttatttttaatgttatagacCATTTAGTCATAGAGACCGACTGACTGTATACAAAActaataaatgtttgttaaacaggaagtgagATCGCTGGACTTCAGACAATCGTTTGTCCAAAACCAACAGCAAATCCACCAGAACCAGAGGAAACTGGAGCAACATGCAGGAAGCACTGAAGAACCAAAGTTAAGCAGCACTTTAACTTCCAACACCTCTGTTAAAGAGAAAGAGCTGGAAAAATGCCCTGAAACGTCTCCTTTGCTCgTGGGTCCGCTCCGAATCGAGTTTTCCACTCCAGTGAGCCTCGATCAGGTGAGGAATGAGAACCCAGCGCTCGGGGAGGGAGGACGCTTCAAACCCAAAGATTGCATAGCTCTGCAGAAAGTGGCCATCATCATCCCCTTCCGAAAGCGAGACGAGCACCTCAAGTACTGGCTTTATTATCTCCACCCGATCCTGCAGCGGCAGCAGCTTGACTACGGCGTCTACATCATCAACCAGGATGGAGATGAGACGTTTAACCGGGCCAAACTGCTTAATGTGGGCTACAGTGAGGCCCTGAAGGAGTACGACTACAATTGCTTCGTGTTCAGCGACGTCGACCTCATCCCCATGGATGACCGAAACACGTACAAATGCTTCAGCCAGCCAAGacacctgtctgtctccatGGACAAATTCGGCTTCAGGCTTCCGTATAACCAGTACTTTGGCGGTGTGTCCTCCCTGAGCAAGGAGCAGTACCTGAAGATCAACGGCTTTCCAAATAACTACTGGGGCTGGGGAGGCGAGGATGACGACATCTTCAACAGGCTGAGCTCCAAAGGGATGGCTATATCCAGACCTAGCGGTGTAATTGGAAAATGCAGGATGATCCGTCATGAACGGGACAAACAGAACGACCCGAATCCCCAGAGGTTTGACCGAATAGCACACACCAGAGAGACCATGCACACAGATGGCATCAACTCGTTGTCCTATAAAGTGGTGAGAGTGGAGAAGGACCAGCTGTTTACCAAAATTACAGTGGATGTCGGCAAACCATAAAACTGATGTTTTACCTGAACATACTcctaaaagattttaaaactgTCCATCAGGAAGACTGGATGCAGTAACCAAATGTGCCTTGACATTTTAAGTCGAATATACctttgaattctttttttttttaaataatctttatcTTTTTGAAGTGAATTCTGttctatttttaaaagacattaGTACTTGGAAATTTATTTGCCATCTTTGCACAAGCGATGGTGAACCGAAAGAAAGTGGACGTGTGAATTGAGGTCATAGTGGtggttgtgtgtctgtgttttcttttttttttttttttcttttcctaaagTGCTCTCACTGAGCTATTAGAGCATCTCTTGAGCCACAGCTGATGCAACTTGCCAAGCAAGGCATTGTGTAAAGAATGTAAgctgcagtgtgtctgtgtcgtCTTTTCCAGCTTTGCCTTAAGATCACCTCTTTACACGTTGAAGATTTAGAGAGGAGTTTGTGCCGGACTTGCTATCATTCCAAGTCATGCAAAGAGCTTAAGCCTTTTTAAAATCCTCATTCCACTTTTGTGGCCATAAACCAAAAAGAAGACttgcgttttgtttttttgaatgtATCCTTGGTGCTTTACCCTTTGACTGTAAAGGAGTCTAACTCTCTGAGGTAGAGGTGGGTAATTTAAGCAAAGAAAATTGTAATATCCTCATACTTTTCATCatgcatattaaaaatataaaatgtctatGAACTGTTTGAAAAAATTTCCTTTCAGTGTTTACAAAAAGCCATTTAATATAGAACAGGAGAAATAGCATACAACAAGAAATTAATGAGAGAAACGCATAATAGGCTTAAGTCCAACAATACAGTACAAGCAGtagcagaggtgccaacatgcACGGTTTACCTGTAGCATTCCCGATACTTGACACCATACTATGGTGATATAGGAGACACCTTAAAACCTAcaattttctgctttctcagctaTAGCAAAGGCAATTacctgaaggggaaaggacatgaGATTGGAAAAATCGTGCATTTTTCCGTGTAGTGGTTACTTTCACTTTGTGCAACTTCTCAGTGAATTTGAGCTGTGAAGTTACAAACCCCAGTCTTGTGAGACATTTGAAAGCATCTATGGTGGgtaaaaaaatggaggagctgcttattattcAGTAGCGATCACGCACCTTGAATCTGTTTGCAtgaattccaaaatctaatcagttcatctgctgcttacagtgataattccatacaaatcctgcaaacattcaaccactcagtCTTGAGATATTGTCCTAAGGAGAATATCATACGCATGGACACCATATGTGggggtttttgtggtaaaattctgtttttttaaggattttCTTATTAGTGATGCTGGCACCTCTTCAATACCCATAATTTACTTCAgataaaaaacagtttatgatGTTCATTGCAATAACAAATCGTCCACCTCTACTCTAAAGTTGTGGTTATCTCTGAAGCTTAAAAGCAtgttataatttattacataGCTGAATATAAGTTTGGTTTGGAAAAACTTCAATGTAGTATAGCCAGCCATGtgtctgcatttttctttttcttcccccGTGAGCCACGAGCgagaaataattaatatattctAATgccttttgttatttttggtgATAACTGCAACATCACTGGGTTCATGGAAAAATATGTCTACTTCTGTTTTGCGCTTAATTTGTGTCGtagcctttttttatttttcatggtTTAAAACCCGAAAAGTACAATACctgattttatttctgcttttgtaCTTCCTTAAGGGAATATTAAGATGAACATCTTGTATGGTGAAATGTTTCTATAAGAAAGCAgacatgcatttatttgttgtgATGTGAGAGGAAAACAAAGCCATTAAAAGTTTCACTAGCTTAAATATCTTCATTATGCGCTGGTTTGTCATTGAGCCTTCCGAACCTAGTCTCacttattcttctttttctccttgaACCCCAAGACTAGCGGTGACCTGGGGATTGAGCATGATTTGTTGAACATGTGCTCTGTAGGTTGCAATTATTTCATATCTTTTGTATTTCGTATAGATAGTAAACAGTCACAAATTGCTTTTCATTGGCTAGTCAGAAATCTACCATCGAACCCAATGCTTTTCCATATACTGAGCAGCTGAGTGGCTTTTCCAGCTGTTTTTCCAGCTGAGTATATAATGTACAGAATATTTAAGTCCTGCAACTGAGCGCAAGACACTTTCTTCCTCAACCCACCCCCCCTCCTTCATTCCAGTACTCCCCAAACCCCAATGACTTCTTCAGCATTTTCTGTGAAGGTTCTCTCATGCTTCTTaaacttttctttctcctttttctcctgTCAAGAAAGGTTGCCATAATCAGCCTGGCATCTAAATTTTGTAACTATTTGGACAACGGCCTTTGATCAGAGAGCCAGCGCATAGTTTCAgggtggaattttttttttttccttgatttTACAAAAGCTATCTTACTTCATTCTCTTTAAGTTGTGTTTGTCATGCTTTATTTCGACATACAAAGATGCAGCAATCTTTCAAATCTTTCTTgatttctgaatattttgtttttcatatcatATTGCTGAAGATAAATGCAATTGTGATCTTaaagaattaaatgaaattctgaCATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254506 lncRNA downstream 27926 21516860 ~ 21558172 (-) True G214958
TU254497 lncRNA downstream 29442 21446081 ~ 21556656 (-) False LOC117598823
TU254496 lncRNA downstream 29442 21515927 ~ 21556656 (-) False LOC117598823
TU254499 lncRNA downstream 29442 21519093 ~ 21556656 (-) False LOC117598823
TU254501 lncRNA downstream 66685 21446081 ~ 21519413 (-) False LOC117598823
TU254525 lncRNA upstream 1009 21614884 ~ 21615115 (-) True G214975
TU254520 lncRNA upstream 2007 21615882 ~ 21616213 (-) True G214970
TU254526 lncRNA upstream 2727 21616602 ~ 21616832 (-) True G214976
TU254527 lncRNA upstream 6803 21620678 ~ 21621921 (-) True G214977
TU254528 lncRNA upstream 14254 21628129 ~ 21631867 (-) True G214978
XM_034309841.1 mRNA downstream 205882 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 218986 21360562 ~ 21367112 (-) True arl9
XM_026916544.2 mRNA downstream 218989 21360562 ~ 21367109 (-) False arl9
XM_026916242.2 mRNA downstream 226908 21352281 ~ 21359190 (-) True LOC113528016
XM_026916243.2 mRNA downstream 226908 21352283 ~ 21359190 (-) False LOC113528016
XM_034309813.1 mRNA upstream 712851 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 785810 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 938849 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 939754 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 939755 22553630 ~ 22582102 (-) False topaz1
TU254170 other downstream 558839 21014439 ~ 21027259 (-) True fgf2
trnal-aag_9 other downstream 1173168 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 1522608 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 2137764 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 2509758 19076269 ~ 19076340 (-) True trnat-cgu_6
LOC113546932 other upstream 58287 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 58947 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 61763 21675638 ~ 21676807 (-) True LOC117598868
TU254923 other upstream 62396 21676271 ~ 22215359 (-) False G215187
LOC117598954 other upstream 70149 21684024 ~ 21684645 (-) True LOC117598954

Expression Profile