RNA id: XM_026937154.2


Basic Information

Item Value
RNA id XM_026937154.2
length 2275
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC113540583
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21541990 ~ 21546092 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCACTCATGAACAAGATCTCTAgctggtagagagagagaacaagaggaCTGTTCTGTGGATGAAATGAGGATACAGGTCATCTTTGGGATCCTGTGGATGTTCATAGGAGGTGCCACAGGTTTGCTGTTTCACGATCCTGTTGTCTGTAGATTTACAGAGACTAATCAGTGTTATGTAGCTCTGGGACAACGATTGCACCTGCAAATGGTTGAGGAGGATGTGTTTTACCTAATACTGAGCAGCAATACATCTAccaatcatttcattttaaagtatACAAAAACCAAGCTTGACCAACCAAAACCAAATTCCCCAAGATGGCAGTTtgttaatgataataaaactaTGATACTAAGCAGTGCAGAGCGGAATGACTCTGGAACATACCTTTTAGCCATCAATGATGCAGACGggaatattaaaaaacattataaactcCAGCTGAACATTGAAGCTGAGGTGTCCTCAGTGAAAGTGTCATACAGCTGCTTGTCCCATGGGATCAGGAAAGTGTACTGTTCTGCTGATGGAGACAACCTCCGCTTCCACGGGACTTCTGATTTAAACCTAGTTTCTCAACTAGAGGATGGGATCAGCACTTTCCTGCTGGAACAAAGCCATGGAAATGTCACCTGCTACGTAGAAAATCATGTCAGTAGCGAACAAAATTCCACTGAACTCCACCCATGTCTCATGACCAGCTTCACACAGTCTAATACTGGTTTCATGGTGTTCTTGTCTGTGTGGCTCTTTGAAGTCATCATCCTACTGTCGCTGTTAGTGGGAGCATTTTATATCTACACCAGAATCTACAGGAAACAGAGAATAACTGATAGAAATGATGAGGAAGCTCTATAAACCTGGATTAGGAACAGAAGAAGCAGTTCATGGTTTCTTTCCTCTATGCCAGTCATCATTACTCTCCATCTCATTCAGACCATAATAACAGACAGTTTACAAAGAACACAAATTCTTTTAAACCACATTTGGGTTTTGCTCGTTCAAAACTAAAACAGCCTTATGATTCCTGCAGATTCATTGGCCTTGTTTCTGtcaaagtttatttttaatattctaaaaCAATGCACTGATTTAATGCTGTTGTTACAATCACACCAACAATGCTTtgtggaaattattttaaaatatgtaatatatgtcaGATTTGAAAAAGAACGTGTTGCATTTTTTACCTGAAACAATCATGGACCAGTTAACTgtgtcttaataataataataataattaacattaggGCCAGGTACAAAGAATAATCTAAAGTGCAGGGATTGGTGAGAGCACAGACAACAATCCACCCAGCTGACAAAGTAGTATAGGCATTTGCCTGAGCATTTGGTGTACAAGAGGGTCAGGGCCTTTTCAATACAAATACCTGGCTCTTGAAGTACAGCTGAGACAAGATTGAGTAGAGGAacataaaaggaaaaagagatcCAGGAAACACGGATTTAGGTTTTGTTGActacattttgattttattttttttttgtgaatccaacTGTCCTTTTACCTGTAACATTGCATGTAGGGTTTGAGTGTACACCGGTCAGAGCAGGAAAGGTCTTCTTTCATTGTGGGAGACAGATCATTCAGAATAAGAAGCTGAGAAGGAGGGCCAAGATGCTGTGAATGAGGGCTGCACTTAAAAACAGATGGGATGAAAGTGGATTTGTATGAAGACAGATATTGAGGAACACCTACTGAACATTTTTCTCTTCTATTGCTGAAAGAATCACCTATGACATCTATGTAAACATGATTGTTAATCAACAAAAGCCTGGAAGACAAAAAAGGGCGTTAACTAAACCATAAGGCATAACTAGATATTCACATTGAGCGTTATATTAAAAATAGACACATTATAAATGTGTGATGTAATAAAAACCATGGCTTTAAGGCTCTAAGCACTAAGATCAGTGGGAATTTCATTGTGAGAGAATTTAGACCCAGTAATATAAGTCAGGGCAGATTCTGGGGAAGTGAACCCAAGTTATAGGGCTTCTTTTATGTACTCCTCCTTATGTAGACATGATCATACATGGCATGTAAAAGTCATTCAAATTGTGAAATCTATGACAGGACAAATTCTGCAGAAATGAACATGCTGATATACCTAACTTTTAGAGCCAATCACAAACTAATGAGCACTAGGCTACCGACGTTCCCTCCTGTGGTGCCCTTTATACCGTTTTTTTTGGTTATGGTAGAtttttttggctggatactttTTAATTTACCAAAattaaaatggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254327 lncRNA upstream 28950 21512571 ~ 21513040 (+) False LOC113540568
XR_004579360.1 lncRNA upstream 36204 21502137 ~ 21505786 (+) True LOC117598827
TU254324 lncRNA upstream 67027 21474633 ~ 21474963 (+) True G214807
TU254320 lncRNA upstream 75264 21447993 ~ 21466726 (+) True G214804
TU254318 lncRNA upstream 93586 21426974 ~ 21448404 (+) True G214802
TU254249 lncRNA downstream 5457 21551549 ~ 21556401 (+) True G214747
TU254247 lncRNA downstream 11898 21557990 ~ 21565376 (+) True LOC113540569
TU254342 lncRNA downstream 71003 21617095 ~ 21617294 (+) True G214825
TU254346 lncRNA downstream 88759 21634851 ~ 21635074 (+) True G214829
TU254607 lncRNA downstream 110169 21656261 ~ 21656835 (+) True G215042
XM_034309842.1 mRNA upstream 19991 21514573 ~ 21521999 (+) False LOC113540569
XM_034309811.1 mRNA upstream 28956 21482022 ~ 21513034 (+) True LOC113540568
XM_034309840.1 mRNA upstream 61548 21454118 ~ 21480442 (+) True LOC117598820
XM_034309847.1 mRNA upstream 111532 21405340 ~ 21430458 (+) False LOC117598821
XM_034309846.1 mRNA upstream 128510 21405340 ~ 21413480 (+) True LOC117598821
XM_034309812.1 mRNA downstream 74539 21620631 ~ 21631906 (+) True rest
XM_034309814.1 mRNA downstream 917062 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 991410 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 1068767 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 1187643 22733735 ~ 22754432 (+) False rnf44
TU254301 other upstream 192904 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 193161 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 193161 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 193161 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 193161 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 99760 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 99988 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 101144 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 112410 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 114333 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile