RNA id: XM_026947025.2


Basic Information

Item Value
RNA id XM_026947025.2
length 3962
RNA type mRNA
GC content 0.47
exon number 11
gene id pdlim7
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22781366 ~ 22825233 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGGCCATTTCACATCAAGGTGCGCGCATCACTGGTCACGTGACCGCTGACGCGGCTGCCCGAGTCCTGCTGAAAATCCAGGAGGGAGCGCGCGAGCGGCTGCAGCTGCGCGCGGAGGCGAGCTCACACCTCGACAGCAGAGCTACTGAAAGTTTTCACTGTTTACTATCTGCTAAAGCTTTCCTGTGCTCGATAAATAAACACCATTTCACCATGTCTGGAGACACTAAAGGCACACAGGCGgccatgAACGTTTACAGCGTGACGCTCAGCGGGCCGGCGCCGTGGGGTTTCCGACTCCAGGGAGGGAAGGATTTCAGCATGCCTCTCACAGTGTCCAGGctgactCCTGGAGGAAAGGCAGCTCAGGCCGGAGTCGGCGTGGGAGACAGTGTGGTGTCCATTGGAGACTCCAACGCTGAGGAGATGACACACGTTGAGGCACAAAACAAGATAAGAGCAGCAACTGACTCCCTCAGTCTGACACtcagcagAGCTTTCCAGTCTCAAGGTGAACAGAAGGCATCGCTTGCTACTGCACCCACTCAGCCTAAGTACTCCTTCACGCCCAGCACGACCATAAACAAGATGGCGCGGCCTTTCTCTGCCTCTGCTAATAAATCCAGCACAGGGCCCGTCATCAAACCGGTGGCGTACGCTCCCAAGCTTAACACCAACGCATCTAACGCCAGCACGCCAGTGTCAGGCAGCATGCCCCCCTCTCAGAACGGCCATGGAGTGACTCCGTGCCCCAGCAAACCTGCAGCAAAGCCCGAAGGAGCTCGAGCTCCAGCTCATAAATCTTCCACCACGTCCGGACCTTCGAGCCGCCCGCCTTGGGTGATGGACCCGAATTTTGCCGAACGCTATCGGCCGGATAAGACGAGCACGGTGGTGACGCAGCACAGGCAGCCGGCGCAGCCCACACCCGAGCAGAACCGCAGCTCCATCCTCCAGGCTGCGCAGCAGAACCCGGAGTCCGACTCCGGACGCACGCCGCTCTGCGCCGCATGCAACAAGATCATAAGaggtCGCTATGTGGTGGCTCTGGGCCGCTCCTGGCACCCGGAGGAGTTCACGTGCTGTCAGTGCCGAGCCGTGCTCGACGAAGGCGGCTTCTTTGAGGAACAAGGCTCCGTTTATTGCACCAAATGCTACGACAATCGTTACGCCCCCAACTGCGCCAAGTGCAAGAAGAAGATCGCTGGAGAGATCATGCATGCCCTGAAGATGACCTACCACGTCCAGTGCTTTGTGTGTGCCGCCTGCAGGAGGCCCATCAGAAACCAGGCCTTCTACATGGAAGAGGGCGAGCCTTACTGCGAGAGAGACTATGAAAAGATGTTTGGTACTAAATGTCATGGCTGTGACTTTAAGATCGATGCCGGCGACCGCTTCCTGGAAGCTCTAGGCTACAGCTGGCACGACACGTGCTTCGTCTGTGCGCTTTGCCATGTCAACCTGGAGGGCAAGACGTTCTACTCGAAGAAGGATAAGCCTTTGTGTAAAGGTCACGCCTTCTCTCCACTTTGAGGAGCCGAGATCCAGCGCTCCAGTGGAACACACAACATGGAGAGAATCCTATGGCAAGGGTTATGATGGCTCAGAATTTCTGTGTAGTAATGGACTGAAGTTTTGGAATACTGACTTCTGATGTgtagtaaaaaacaaaacaaaaaaaaaccccttttttaaatatctggtAATAATAAGACTGCCGAGAGAAAACCACGAGGTGCTTTTCAATGGTCTTGatcttattgtttttaaataaataaatagtaggAAATGATGTACGTGGGTTTTCTCCCGACAGAGATGATTAGGCCAGTTCTGAGCTGTGTAGCCAGgaaatgtcagccattttgctTTGGCAGGTAAAGCCTTCACCATCCCTGCCAGTACAGGTTAGCATTTCATCCCTGTCAGTATTTATTTAGGAAACAGGCCACTTTTTTCCACACAGGTAATGATTAATCTTGAGATAAACAGGGATGCAGGATCCTTATTGATATTGAATAGTTACTGGATATAGATGCAAATTACAGGTCTTGATAATGCTAAATATGAATAGGTAAAGCCATCTTCTGTCTCATGTTGCCAGTATGTGCTTATACATGCATGCCTACCACACttcactgtttttctctttcagattgCTTTAATTTCACCCCCcccttgttgttttttttttttaacatacacGGGCACTCTCTAGTCAATCATGCAATATCTAAATCGCAGATGAACTACACAAGTACGTTATTCGTCCGAGAACGCGTACTACCTGGTCAAATTAGGTCTGGAATACACTTATCGCATGTATAGAAATATTAGCCCTAGGTGTGACATCATCCTAACGCTACGTCAGTGTAGCCCTGCACGTCCCCAGACAACCCGCAGTCCTCTATCCCCATGTGCCGTGGTACTTAAAGTAATGGCAAACCCGCCGAGGAAGAAAAATGAGCCTCTGGCAGCCGAACAGCACTGCATTAGCGCTGATTGCGAGAGGTTCATATTGACCTGAGCGACGATCTTTACGTGCTTCCCATACCGAGCATGCCACGACTGTCTGCTCTAATCTGACAGGTACCTCTAATTAACAAAAGGCTTAGGGCCTGCGTGAGCCAAGCTCGTTTTCTGAGCATGAATTTACATGTTTTAACCAAAAGGCTCCTGCTGATCAAAGAAACAGATCAACACGATATTGCCCCTGTCAAAGAGTATGTGGTGCTGCCATGATCATATGAGTTTGGTCATTACTCACAATCTTTTAACATCAGCATCTCTTGGTGAAGCCAGATCCTGCTAACACGTGACTGTTTTAGTGTGCAGGCTAGTCATTAGTGTCATCGCTGTGGTGCTCTGTCTCAGTCCTAGAGGCCTCCCCTTGGCTCTGGCACCTGATTCGACTAATTACAAGGTCATTAAAGGAAATCTGCAGCATTTTTCAATTTAATCTCCAtccactgcatctgtagtgtgtgatgatcacagacaagaatttcaacactGTTCCCTATGCAGAGAAAACAATTCCACCATTAAACAATGGAAAATATGCAACTATACATCAAGTATTACAACCATTACACTCTAATAATAAAGATCTTCGGGTTAAGACAtacatggaggaggaggagcatcacagatattttgtcagccagtatctgattacaaactatTAGCTAAGCTTGGCTCCTTATTCAACATGATCTTTACAGAAAGATAGCCCAAGCGAGGtgagaaagtaaatacaaaATCATTAAAGATGAGAtatcaaatgtatattttagacagaaaaaatatttggcAAAAATCTGATACTTGTGTTTTCTCATAGGTTTTCCAAAACcattacacatatatacaaaaaaatacatctttaaATTGCGTGTCTTGACAAAAGCAGAAGTCTAATTCCATTATAAATGAATTTGGTCATTTTGTGTATAGGGAAATATTACAAATTTTGTCTGATGTACTACAGATGCACTAGATGGagattaggtttaaaaaaaatgattgtaaaAAGCGTTCGCCCAAACTGGCTGGTGGGCGGGAAATGGCATGTGACCAAATTCTAGAGAAGATGTACAAGAACCTGCCTTCTGATATCACTAAAGCAGTCTCGGCCTTTAATATTGGACAGTGCCACTTCCTGTATATCCCACTTCttatatattcttttattaGACAGTACCTTCATTTTGGGAAGCACTTCTGTTCTTTAAACCTGTCGTGGTTACTGCGGGTCTGTTACTCTTCGTCTCTGCGGATTATCGAGTGCTTCTCTTACTCTAACACATCACCTAAATGAGCTGTTTGGGCTCATTACAAGCTCTTAATGAGTCGGCTGATGTGTAATTGCAGAATGGGTTTAGTGCAGAGAATGTAGAAGCCAGGCTAAATTCCTCTACCTACACGTGACATTAGACTATTAGACTATTAGACAATCCAA

Function

GO: NA

KEGG:

id description
K19867 PDLIM5_6_7; PDZ and LIM domain protein 5/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255137 lncRNA upstream 790 22780290 ~ 22780576 (+) True trnat-cgu_7
TU255136 lncRNA upstream 2125 22778616 ~ 22779241 (+) True G215343
TU255128 lncRNA upstream 45380 22735771 ~ 22735986 (+) True G215336
TU255084 lncRNA upstream 54720 22724687 ~ 22726646 (+) True G215294
TU254759 lncRNA upstream 375842 22401950 ~ 22405524 (+) True G215153
TU255085 lncRNA downstream 1788 22827021 ~ 22830832 (+) True G215295
TU255144 lncRNA downstream 16111 22841344 ~ 22909078 (+) True G215350
TU255154 lncRNA downstream 29012 22854245 ~ 22857421 (+) True G215360
TU255220 lncRNA downstream 104255 22929488 ~ 22929797 (+) True G215425
TU255271 lncRNA downstream 201210 23026443 ~ 23027619 (+) True G215476
XM_026947039.2 mRNA upstream 11730 22765814 ~ 22769636 (+) True higd2a
XM_034310060.1 mRNA upstream 26934 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA upstream 26934 22740940 ~ 22754432 (+) True rnf44
XM_034310061.1 mRNA upstream 26934 22740940 ~ 22754432 (+) False rnf44
XM_026947101.2 mRNA upstream 26934 22740940 ~ 22754432 (+) False rnf44
XM_026947058.2 mRNA downstream 316481 23141714 ~ 23143760 (+) True LOC113546949
XM_034310058.1 mRNA downstream 321964 23147197 ~ 23156708 (+) True LOC113546924
XM_026947060.2 mRNA downstream 335230 23160463 ~ 23163243 (+) True LOC113546950
XM_026947057.2 mRNA downstream 343111 23168344 ~ 23170849 (+) True LOC113546948
XM_026947067.2 mRNA downstream 458015 23283248 ~ 23285620 (+) True atoh1b
trnat-cgu_7 other upstream 1009 22780286 ~ 22780357 (+) False trnat-cgu_7
TU255135 other upstream 11739 22765814 ~ 22769627 (+) False higd2a
LOC117598850 other upstream 245590 22495208 ~ 22535776 (+) True LOC117598850
LOC117595678 other upstream 279996 22500883 ~ 22501370 (+) True LOC117595678
LOC113546936 other upstream 310688 22470179 ~ 22470678 (+) True LOC113546936
TU255140 other downstream 10431 22835664 ~ 22835902 (+) True G215347
TU255422 other downstream 312013 23137246 ~ 23170553 (+) True G215621
TU255420 other downstream 316519 23141752 ~ 23170218 (+) False G215621
XR_004579446.1 other downstream 906221 23731454 ~ 23740984 (+) True LOC113546919
TU255678 other downstream 917322 23742555 ~ 23748067 (+) False igfbp7

Expression Profile