Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026947043.2 |
| length | 1440 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 7 |
| gene id | LOC113546919 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 23731454 ~ 23741390 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006955 | immune response | biological_process |
| GO:0051205 | protein insertion into membrane | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008009 | chemokine activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU255659 | lncRNA | upstream | 108845 | 23622372 ~ 23622609 (+) | True | G215824 |
| XR_004579448.1 | lncRNA | upstream | 137806 | 23591868 ~ 23593648 (+) | True | LOC117599008 |
| TU255512 | lncRNA | upstream | 342101 | 23388418 ~ 23389353 (+) | True | G215685 |
| TU255511 | lncRNA | upstream | 342219 | 23388418 ~ 23389235 (+) | False | G215685 |
| TU255489 | lncRNA | upstream | 364659 | 23366281 ~ 23366795 (+) | True | G215667 |
| XR_004579396.1 | lncRNA | downstream | 6817 | 23748207 ~ 23751597 (+) | True | LOC117598845 |
| TU255669 | lncRNA | downstream | 6818 | 23748208 ~ 23751596 (+) | False | LOC117598845 |
| TU255727 | lncRNA | downstream | 177697 | 23919087 ~ 23920371 (+) | False | fbxl16 |
| TU255907 | lncRNA | downstream | 564562 | 24305952 ~ 24329994 (+) | False | rbfox1 |
| TU255908 | lncRNA | downstream | 564562 | 24305952 ~ 24329994 (+) | False | rbfox1 |
| XM_026947010.2 | mRNA | upstream | 1342 | 23712519 ~ 23730112 (+) | True | cpxm1b |
| XM_026947121.2 | mRNA | upstream | 176946 | 23457803 ~ 23554508 (+) | True | LOC113546983 |
| XM_026947123.2 | mRNA | upstream | 176946 | 23457803 ~ 23554508 (+) | False | LOC113546983 |
| XM_026947122.2 | mRNA | upstream | 176946 | 23457803 ~ 23554508 (+) | False | LOC113546983 |
| XM_034310312.1 | mRNA | upstream | 181041 | 23457803 ~ 23550413 (+) | False | LOC113546983 |
| XM_034309817.1 | mRNA | downstream | 1092 | 23742482 ~ 23748131 (+) | True | igfbp7 |
| XM_034309675.1 | mRNA | downstream | 26184 | 23767574 ~ 23772974 (+) | True | noa1 |
| XM_026947012.2 | mRNA | downstream | 32990 | 23774380 ~ 23778006 (+) | True | eef2kmt |
| XM_026947110.2 | mRNA | downstream | 43246 | 23784636 ~ 23790699 (+) | True | c13h16orf89 |
| XM_034309779.1 | mRNA | downstream | 68909 | 23810299 ~ 23813635 (+) | True | si:ch211-76l23.4 |
| TU255422 | other | upstream | 560901 | 23137246 ~ 23170553 (+) | True | G215621 |
| TU255420 | other | upstream | 561236 | 23141752 ~ 23170218 (+) | False | G215621 |
| TU255140 | other | upstream | 895552 | 22835664 ~ 22835902 (+) | True | G215347 |
| trnat-cgu_7 | other | upstream | 951097 | 22780286 ~ 22780357 (+) | False | trnat-cgu_7 |
| TU255135 | other | upstream | 961827 | 22765814 ~ 22769627 (+) | False | higd2a |
| TU255678 | other | downstream | 1165 | 23742555 ~ 23748067 (+) | False | igfbp7 |
| XR_004579369.1 | other | downstream | 450363 | 24191753 ~ 24327960 (+) | False | rbfox1 |
| XR_004579370.1 | other | downstream | 450363 | 24191753 ~ 24327960 (+) | False | rbfox1 |
| TU256099 | other | downstream | 715680 | 24457070 ~ 24458004 (+) | True | G216197 |
| TU256100 | other | downstream | 715680 | 24457070 ~ 24458004 (+) | False | G216197 |
