RNA id: XM_034310059.1


Basic Information

Item Value
RNA id XM_034310059.1
length 5295
RNA type mRNA
GC content 0.46
exon number 11
gene id rnf44
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22733735 ~ 22754432 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGTCATCACAACTGGGACGTAAGCACCCCGACACAATGACAACACGCGCAGTGGAATGCTTGTGAAATAAACGCAGTTGAACAGTTTCACCGTTAaaaccgttttttttttagtttcggATTTTgagtgttaaaaaataaatagtctaaacagcaataaaaaagcGCTTATGAGTGGAGTTTATTGCTGTTTTGCTGGCCATGAAAACACAGCGGCTCCTATCAACAAGCTCAAGCGGGACGGAGTGAAGGATACAaagcagagaagaagaagaagaagactccTAAAGTCAAGCATGCATACAAGTTAACATTTATTATCGTTTAAAGAAAACTGCAAATAACGGattcattgcaaaaaaaaaaataagcctgGTTTAAGGAGTAGGAAGTGTCTGGAGGTGTCGGACCCGCCAGAAAACAAAGCTGAAGAGAATTTGAGGCTGTCGGACCAGAGTGCCTCGAGCACCAGTGCTCCCCCGCCCGTGGCTGCGACTCGTTCTTCACAACATCCCCAATGCGACCATGGGAAATAGCTGTGAATAGGCGGCCGCCAACAGCCCCCTTAAACCAGAGGAGCTTCATCGGGGGTCCCTGCAACGCGCCCGTGCACCTCAGGAGAAGGTGGGACTGTGCTGCTACAACTCTCATTCCTTTAACAAGTGTGTTCATGGTTCGCTTACTTAAAAGTCCTCCAGCACGCTGGCAGTGGGGGCAGCGAGACAGAGCGGCTGTGCACGCTTCCCCGCGTCAGGATGAGAATTTTCCCCACGCCGCATtccctcagcagcagcagcaccaggCCGTTCCTGTAGAGGAGGCGAGGCAGTACAGCCAAGCCGGCGCGCCACCCCGCAtgctccatccatccacacaccCGCCGCAGCAGACCTCCATCATGGTGGACCTTCATGAACAAATGCACCAAGGATCTGTTCCGATATCTTACACAGTTACCACGGTGACGACCCACGGCTTTCCCATGCACACGGGGCAGCCGATCCCAGCGTGCAACGCGCAGCAGCTCCCAGCATGCTCGGTAATGTTCAGCGGACAGCTCTCTCTGCTCTGCTGCCTTCCTCCTCCTCTAATCCAGGCGTGCACCATGCACCACTTACCTGTGTCTTACCAGGCCTTTCCGCCTCTGATCTCCAGCGAGCATTTCCTCCTGCACCCGAGTCCTCCAGTGGCGCCGCATCAGCCCCCGGCGCTGGCGCCACTCAGCCACTTCATCCCCCTGCAGCCCCAGCACCCGCGCATGCCACTGCAAAGGGTGGAGAATGAGGTGGATCTGAGAGGAGAGCAGCACCATTTGGGAACTTTCTCGTACCCTGCGGCTCATCACCCACCAGCAGCCATGCCCCCCTCCGTGCCCCTGCAGTACCACCTGCCCCAGGAACCCCTACACCAGGAGCTGCCCTTtgcggtgcCGTATCCACACATGCTACCCAGGCGTGGGAGTGGCCAGAGGTATCGCTTACAGCAGCCGCTGCCTCCTCCACCCCCTCCTCCGCCCTACTACCCTGGCTTCCTCCCTTACTTCCTCTCGATGCTTCCTGTGCCTCCGACTGCTGTGGGTCCGGCTATCAGCTTGGACCTGGATGTGGACGACGTGGAGATGGAGAACTACGAGGCGTTACTGAACCTCGCAGAGAGACTCGGCGAGGCTAAACCTCGAGGACTGACGAAAGCCGACATCGAACAGCTTCCGTCCTACAGGTTCAACTCGGAAAAACACCAATCAGAACAGACTCTGTGTGTCGTGTGCTTTAGTGATTTTGAGTCAAGGCAGCTACTTCGAGTATTACCCTGTAATCACGAGTTTCACGCAAAGTGTGTGGACAAGTGGTTAAAGACTAACCGCACGTGTCCGATCTGCCGCGCGGATGCTTCCGAAGTTCACCGTGACGTGGAGTGAGTCCGGGCCTTCGTCCTTCACTGGATAACAGCACAAACCTTGGAGTGTGTGGTGGGagcgggcacacacacacactcacataataCATGTGCGCACCACCCAACCCTGTGCCCTCCAGCAAAATGTAGAAGCATCTCCTACACACTCCAATCGCTcccctcaccctcaccctcaccctcaccccAAACATTCGACCAATAAGCAATCTTGGAATTTGTACGGATTGTGTTAGACCTCCGCTGTGCTTCTCACGCAAGCTACTGCCTCCTCTGAGCCCGGCAAACTCCCACAAACCCCGTTTCGAGTTTTCATTCCCCCGCCTTTATTTTTTTGCCGATTCCAAAGATTAACGTGTGTGGTGTTGGCATCTGTTTACACGGTTGAATGTGTTCTCGCTGTTCGCTTACGAATAATCCAAGCTGTGCTATAGCGGTGTGAAGGGAAGACGGGGAGGAGGTTCGAGGACGTTGCTCAATCgggggaggagaaaaaaaaggcaaccgACGTTTGTCCATTCCactgtcttttaaaaaaaaaaaaaaaaagagaaaagaatcgCCTGATCATTAGCTGCATGTTTGTATAGGTGATGGGCTGAAGTGACTTGTTAATAATGTATGTTTCGCAATAATGTATTGATGATTTCAATAGCTCTATCCCAGCTTTGCTAATGTGAGCGTGAACGGCAGTGGCTCCGAATCTTTTGAgctaacgaaaaaaaaaaacaaaacaagtacTGCAAACTAAACaggatgaatgtgtgtgtacgtctGCTCCTGGGCCTCATCGCTGTGGAGTTTTGCACTGTTGCTGCACTGGAAAGGTCACAAGGATGAGGACCTTGTCACGACCTGTGACCTCTGGCCGCCTCCCAACCTGGCTGTACTGCTCGGGGAAGCCCTCCTCTCCTCCATCCTTCACTATGTTTGCTCTCTCCTGGATGGTTTCTCACGGACTGTTGTTTTCTTAGGTTAGCAATACTTTTGACTCGACGAGCTTCTTGCTGCATTTCACGCGCAGGTTCAGCGGGACGGCGGCGAAGGGAATTTCACTTCCACCTGATGTCCAAAAAAACTGACTTTGGAAAAAGGTGCGGTCCCTTTTGCAGAAAGCAATATGTGCAATGAGTGTCTGTCCTGaatgaatcctttttttttttttttttttttttttttttttttttgatatatatatatatatattacatatattattttttggaGGACCAGGCTTTTTCCTCATCTGTGAGCCAAATATTCAATAATTCAATACACTCTCCAAGGATACAGCTCTGCCTTCTTCAAGACGTTGACAAGCACAAACTTGTTACTAATCgtaaacaaagaaacaacaaaacaacaaaaaaaaaattagactcCGTAGTCAGTTGAACTTGTTTTAGGTTTTTAAAACTGGTGTTATTTATTGGCTTTATCTTCTGGATTGAGGGGCAGAGCACTAGCACGGTGTATCTTTGGTGCTGTGCGTGTTTGTGAGGTGTGGGGCCACAGTAGCAATGTGAAGTGATGTAAAAGATGTAAAAGCATTGTACGCATAGCATCTAATTGCCGTCTTGTATTGAGACAAAAGAATGTGGAAACGCCCCATAGCGCGTCGTCGACTCTGCTTGTGTGTGCCAGCTGACTGTAGTGATTCCACAACGATTCAAAGAGAAAAGGTCGTCATTAGAAATGCACTGTAAAACCTGCTCAGCTCCTGGTTCGCTCTGCATAGACTCccgaaaaaaaaaggaaaaaaaattattaaaaaaaaaaataaacagggaTGAAATGTTGAAATAGGGTGTTTTTTGCTACGCTAATTATAGGACAcaaatatatatgatatatataaatataaatatatatattcttgcTTCCTTGTGTACACCGAGTAGCAGTTCTGATCAGACTCGCTTTATGGGTAAAGGGACATCGCCGTGATTTTAGCATGCGAGTCTGTACTGATGCTCaccaggttaaaaaaaaacaaaaacaaacaaacaaaaaaaaaccacaacaagcCATTGTGATGAATTTAAACCACACTTTTGATATTAATGTGTATACATATCCGTTCACTGgcatatattttgaaaaagaaaaaaaaaaaaaaaaagaaaaatactctCAGGGCCTCTCAGTTAacttaaaataaaaggaaaacaggCGGAGGGGATGGATTTGAAAATTTCTCAGTTTTCCTCAGGCCGTGCATATTTTACGTGTAATCCTTTTTAACGGTATTTATTACTACACCAGTTAAAGACCGGcatgcaaagaaagaaaagagaaaaaaaagaagaagaaaacaaaagtgAGAATAGGCAACGTGTCACAGCAACCAATCATCCGAGTGTTACTCAGACATGTCCATGTTTTCGTACTTAGAACTCGTGATCCTgttgcaggaaaaaaattaacaataataaaagtgattaaaaaaaacaaaacaaaacaaacggTCGAGCGCATTATCCTACCTAAACCACTTCCAAATATTAACAGTGTTTTGCATGGGGTGGggaagatatttaaaaaaacaaaacaaaaaaaaaggaacctgtatttttaatttcagtgaaatatCTAGACATGTGTGGGCGACTATTTAATCGTGCACAGTATGCATGCGTGTCTTAACCAGATCCCGGCTGGTTTTATCCttcttgtttattattattattattactatttttttctagTTTCTAAGTTCTAGTTGGCTTCGGGTTCCGGGGATTTCCGGCTCAGCTGAAAACTGCCATGCGTCGTACTGCACAGAACCGAGCGAGACTTTTAAGAAATGCTAAAGCTGATCATAATTAGCGCGCTTGGCTTGGTGTAGAAGGccgtttctttttttcttttttttttggctctcgATCACATTCGTGCTTCTGCTGTTGCCTCAGCGACTGAAACTGACTTGCCTGGAAAAACTCGATCACTGAAAGCCATATAGTGAAACGGTGCTAGATGTCTGTCGCTCCATTCACATTACGGGAATGCAATAGTGTGTGCTATGACTATGACTTTCACGTACTCTTTATAGCATGCCGTGCTAGTAGTGCCCCTAAAACGGTCAGTTAGCAACGTTCAACAGGGGTTTTTGACTGAGAATCTCTTAACTGTTAAAGGTTACTGTTAAGCGCGTGACGGCGCCTCCATAGCGCGCGCGTCCTCGCTGCGTCGTATTTTACTGCCCGCGCGATCACATCAAGTGCATCTGCCTTAAATTTAAAAGCGTGTATTAAAGGGGACTTAAAAGCGTTCGTCTTGCTCTCACCAAAACTTAATATGTACCTGCCATAGGGTCTTTTACCTTAAACAAGCACTATCTGTAAATGTTacggtttaaaaaaattaaaaaataaatt

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K19041 RNF38_44; E3 ubiquitin-protein ligase RNF38/44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255128 lncRNA upstream 4954 22735771 ~ 22735986 (+) True G215336
TU255084 lncRNA upstream 14294 22724687 ~ 22726646 (+) True G215294
TU254759 lncRNA upstream 335416 22401950 ~ 22405524 (+) True G215153
TU254755 lncRNA upstream 397303 22340221 ~ 22343637 (+) True G215149
TU254726 lncRNA upstream 457947 22260891 ~ 22282993 (+) True G215127
TU255136 lncRNA downstream 24184 22778616 ~ 22779241 (+) True G215343
TU255137 lncRNA downstream 25858 22780290 ~ 22780576 (+) True trnat-cgu_7
TU255085 lncRNA downstream 72589 22827021 ~ 22830832 (+) True G215295
TU255144 lncRNA downstream 86912 22841344 ~ 22909078 (+) True G215350
TU255154 lncRNA downstream 99813 22854245 ~ 22857421 (+) True G215360
XM_026947097.2 mRNA upstream 118960 22614859 ~ 22621980 (+) True cckb
XM_034309815.1 mRNA upstream 192074 22537502 ~ 22548866 (+) True LOC113546929
XM_034309814.1 mRNA upstream 250029 22463154 ~ 22490911 (+) True LOC113546930
XM_034309812.1 mRNA upstream 1109034 21620631 ~ 21631906 (+) True rest
XM_034309850.1 mRNA upstream 1194848 21541990 ~ 21546092 (+) False LOC113540583
XM_026947039.2 mRNA downstream 11382 22765814 ~ 22769636 (+) True higd2a
XM_026947025.2 mRNA downstream 26934 22781366 ~ 22825233 (+) True pdlim7
XM_026947026.2 mRNA downstream 31774 22786206 ~ 22825233 (+) False pdlim7
XM_026947058.2 mRNA downstream 387282 23141714 ~ 23143760 (+) True LOC113546949
XM_034310058.1 mRNA downstream 392765 23147197 ~ 23156708 (+) True LOC113546924
LOC117598850 other upstream 205164 22495208 ~ 22535776 (+) True LOC117598850
LOC117595678 other upstream 239570 22500883 ~ 22501370 (+) True LOC117595678
LOC113546936 other upstream 270262 22470179 ~ 22470678 (+) True LOC113546936
TU254763 other upstream 271357 22463100 ~ 22469583 (+) False LOC113546930
LOC117598940 other upstream 343370 22397112 ~ 22397570 (+) True LOC117598940
TU255135 other downstream 11382 22765814 ~ 22769627 (+) False higd2a
trnat-cgu_7 other downstream 25854 22780286 ~ 22780357 (+) False trnat-cgu_7
TU255140 other downstream 81232 22835664 ~ 22835902 (+) True G215347
TU255422 other downstream 382814 23137246 ~ 23170553 (+) True G215621
TU255420 other downstream 387320 23141752 ~ 23170218 (+) False G215621

Expression Profile