RNA id: XM_026947116.2


Basic Information

Item Value
RNA id XM_026947116.2
length 1462
RNA type mRNA
GC content 0.48
exon number 12
gene id nubp1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24867400 ~ 24896195 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCGGATATTCCAAACGATGCTCCTCAGCATTGTCCAGGAACCAGCAGTGAGCAAGCTGGCAAAGCTTCAGCGTGTCAGGGATGTCCGAACCAGGCCATATGTTCCTCCGGTGCTCCCAAAGCTCCAGATCCTGccGTAGAGGAGATCAAGCTGAAGATGTCCACCGTGAAGCACAAGATTGTAGTTCTGTCTGGTAAAGGAGGCGTGGGGAAAAGCACGTTCAGTGCGCACTTGGCTCACGCCCTGGCTGCTGATGAATCCGCAGAGGTGGCTCTGCTGGACGTGGACATCTGTGGACCATCGGTACCCAGAATGATGGGGCTGGAAGGAGAGCAGgttcaTCAGAGTGGTTCGGGCTGGTCACCTGTGTATGTAGAAGATAACCTGGCCGTCATGTCCATCGGCTTCCTGCTCAGCAGTCCTGATGACGCCGTGATCTGGAGAGGCCCGAAGAAAAACGgcatgaTAAAGCAGTTCCTGAGAGATGTGGACTGGGGTGAGCTGGACTACCTGATAGTGGACACGCCCCCGGGAACCTCCGATGAACACCTGTCCGTGGTGCAGTACCTGAGTGGAGCGGGCATCGATGGAGCTGTTATTATAACTACAccacagGAAGTGTCTCTGCAGGACGTACGGAAAGAGATCAGATTCTGTCAGAAGGTGAAGCTGCCCATCATCGGCGTGGTGGAGAACATGAGCGGCTTCGTGTGTCCCAAATGCAAGAACACGTCTCAGATTTTCCCTCCGACCACGGGAGGAGCTCAGCGGATGTGCGAGGAGCTGAGTCTGCCTCTGCTGGGCCGAGTTCCTCTGGACCCACGGATAGGTCGAAGCTGTGACGAGGGAAAGTCTTTCCTGAATGAAGTGCCAGATTCTCCAGCAGCCGCAGTCTATCAGGTTATAGTGCAGAGTATAAAAGATTATTGTGCTTCCGGATTCTCCTCTGATGGAAACCCAAACGCAGATAACAAGTGAACATCAGCGCTGGACAACAGTCTGTGataAAACCTATTTCCGGACTAAATAGAGCCgatgtttttaaatgaagcttcctgaagtgaaatgtttctattcataccacagcattgtcgatttctcagttctgattggtcagaaggtgttgattgttcgttctaatacgttgCAGTTTCTATAGCAGCAGATCATCAGATCAGATAAagtttttttatgtaacatttatggaaggagtctccagtgtcagcgctttgtaacttttttttacgAAAACGAAAGTTTTCTAACATCTTTAGGAcagagtttatagctgctataacgtaagtgagaacaggaactaacttgtttcacggacattaaacgtaactataaacggataaagcGTATGACGTGTTCATTAATAACTAACAAAATTGTAATCGCTGTTCTAGGTAGTATAACTCTGTAAatagctaaaataaataaataaagcgtACAAATT

Function

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579447.1 lncRNA upstream 13160 24829543 ~ 24854293 (+) True LOC117599007
TU256435 lncRNA upstream 127798 24738961 ~ 24739655 (+) True G216488
TU256414 lncRNA upstream 160574 24706620 ~ 24706879 (+) True G216467
TU256410 lncRNA upstream 172029 24695102 ~ 24695424 (+) True G216463
TU256406 lncRNA upstream 180784 24686438 ~ 24686669 (+) True G216459
TU256629 lncRNA downstream 128889 25025084 ~ 25025573 (+) True G216652
TU256605 lncRNA downstream 148184 25044379 ~ 25054895 (+) True G216631
TU256646 lncRNA downstream 260066 25156261 ~ 25157543 (+) True G216668
TU256656 lncRNA downstream 261485 25157680 ~ 25185402 (+) True G216674
TU256657 lncRNA downstream 270305 25166500 ~ 25189043 (+) True G216675
XM_026947095.2 mRNA upstream 37980 24811080 ~ 24829473 (+) True atf7ip2
XM_026947098.2 mRNA upstream 291992 24569233 ~ 24575461 (+) True c13h16orf72
XM_026947091.2 mRNA upstream 328336 24529769 ~ 24539117 (+) True si:ch211-157c3.4
XM_034310263.1 mRNA upstream 328336 24529797 ~ 24539117 (+) False si:ch211-157c3.4
XM_034309897.1 mRNA upstream 448907 24389928 ~ 24418546 (+) False abat
XM_034310275.1 mRNA downstream 3226 24899421 ~ 24920755 (+) False ciita
XM_034310274.1 mRNA downstream 3227 24899422 ~ 24920755 (+) True ciita
XM_034310276.1 mRNA downstream 5363 24901558 ~ 24920755 (+) False ciita
XM_034310277.1 mRNA downstream 5363 24901558 ~ 24920755 (+) False ciita
XM_034309818.1 mRNA downstream 27305 24923500 ~ 24995766 (+) True clec16a
TU256462 other upstream 69775 24797254 ~ 24797678 (+) True G216515
TU256141 other upstream 328411 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256099 other upstream 409449 24457070 ~ 24458004 (+) True G216197
TU256100 other upstream 409449 24457070 ~ 24458004 (+) False G216197
XR_004579370.1 other upstream 539493 24191753 ~ 24327960 (+) False rbfox1
trnai-uau_7 other downstream 458581 25354776 ~ 25354868 (+) True trnai-uau_7
trnai-uau_8 other downstream 459305 25355500 ~ 25355592 (+) True trnai-uau_8
TU257298 other downstream 1409252 26305447 ~ 26306767 (+) True ier2a

Expression Profile