RNA id: XM_026947123.2


Basic Information

Item Value
RNA id XM_026947123.2
length 4819
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC113546983
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23457803 ~ 23554508 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGAAGCACGCGCGTCCGTTTTCATCCCGCTGTTTCATCCGCGCGCGCGTTTGGTCGCTCTTTCCTCCTTCTTCTGAGCAACTTCTCGACCAGACGTTCGCCTTGATCCGGCGCGTTTCTCCTTTGAGATGCTTGGCGAgctctctcctccctcttttaactagacacacacacacacacacatacatacacacactcactcacgcacacacgcgcacacacacacacgcacacgcacacacaaacacacacaccggtTTCATCTTGAACTTGCGAGGTTTATTATTGGGAATCTAAAATAAGACAGGAGCAACCCGGTGGGATACGGAGCGCTCGCGCGCCTTCATCAAGGACCCCTTTGGAGAGGATAAGGACCCTTGTTGACACTTTTTTTGTCGCTAATCTCTTTTTGCCTCCTCCCTTTCAGTTGGTTTTTTATTACTAGCTAATCCGGAggatttctttcttcttcttcttgtttttttttttaattattccgCTCGAATAGCCGGTTTCGAGGGCCGTTTTCATGTTTTCCATCCAGGACGGTCTCCCGCGGGGAGCGCTCACCATGAAGGAAGAACCGCTCGCCAGCGGCATGACTCCGGTGCGCTCTTGGATGCAGAGCGCCGGGATACTGGACGCCAACACCGCCGCGCAAAGTGGTGTCGGTTTGGCCCGAGCTCACTACGAGAAACAGCCTCCCTCCAACCTGCGCAAATCCAACTTCTTCCACTTCGTGTTGGCGCTGTACGATCGGCAGGGGCAGCCGGTGGAAATCGAGAGGACATCCTACGTCGACTTTGTGGAGAAAGACAAAGAATATAACGGTGAAAAGACCAACAATGGCATCCACTACAGGTTACAGCTCCTCTACAGTAATGGAATCAGGACAGAGCAGGACCTGTATGTACGGTTGATAGACTCCATGACTAAACAGcCAATCATGTACGAGGGCCAGGACAAGAACCCAGAGATGTGCCGCGTCCTTCTTACCCACGAGATCATGTGCAGTCGGTGTTGTGACAAAAAGAGCTGCGGGAACCGAAACGAGACACCGTCAGATCCAGTGATCATCGACAGATTCTTCCTGAAGTTTTTCCTCAAGTGCAATCAGAACTGCCTGAAAAACGCCGGGAACCCCAGAGACATGAGACGCTTTCAGGTGGTGATTTCCACTACGGTGAACGTAGACGGCCATGTGCTGGCCGTGTCAGACAACATGTTCGTCCATAACAACTCCAAACACGGAAGACGCGCTCGCCGCCTCGATCCATCTGAAGcagccACTCCATGCATCAAAGCTATAAGCCCCAGTGAGGGCTGGACGACTGGAGGAgccactgtcatcatcatcggAGACAACTTCTTCGACGGGCTGCAAGTCGTCTTCGGAACCATGCTTGTCTGGAGCGAGCTCATCACACCCCACGCCATCCGTGTTCAGACGCCACCGAGACACATCCCCGGGGTCGTGGAGGTCACACTGTCCTACAAATCCAAGCAGTTCTGCAAAGGAGCGCCGGGACGCTTTGTctacacagctctgaATGAACCCACCATCGATTACGGCTTCCAGAGGTTACAGAAGGTCATTCCACGCCACCCTGGAGACCCCGAGAGGTTACCTAAGgaggtGCTGTTAAAGAGAGCAGCAGACCTGGTGGAAGCTCTTTATGGAATGCCTCATAATAACCAGGAGATCATCCTGAAGCGGGCGGCCGATCTTACCGAGGCTCTGTACAGCGTGCCACGCAGCCATAACCAGCTGCCCTCTCTGACCGGATCGAGTGCGCACTCGGGCATGATGGGAGTGAACTCGTTCAGCAGCCAGCTCGCCGTCAACATCTCCGAGGCCACGCAGGCTGACCaggGTTATTCACGTAACTCCAACAGTGTGTCTCCTCGTGGCTACGTGCCGAGCTCCACGCCTCAGCAGTCCAACTACAACACCATCACCTCCACCATGAATGGCTACGGAGCCGCCGGCATGACCAACCTTGGCGTGCCTGGTTCACCCAGCTTCCTCAACGGATCCACTGCCAACTCACCCTACGCAACCATGGCCGGTCTCATCGTCCCTCCCATGTGAAGCAGGAGGAGAAGTTTGTGCTCACTGAGCTTCCCCTGATGAATATAAAACTCCACGATTCTCAAGAACTCACCGACTCAAACGTCATCTTAGTAAATATcctcacatcatcatcatcatcatcaccatcatctaacggaggagctttttttttttgaacaaggAAATCTTTTCCACAACCTGGACAACCTGGACAAAGTgcattaaaaaagataaaaactaacaaaatgtcttttgtttatattttctgttgGATTGAGTCCCCTTTGATCGTCGTCTTCTGGGACTTGTTTTGCAAAGAACGGCAGCCGAAGCCACTAGATTACAGGATTTGAGATGATTTCAGCGTGAACTGAACAGTTTGGAAACGTGCAGCTGTGACCCTCGGCTCGGCTCCAGACTTTTTAGTGCATGCGGAGCTGATCTTGCTTTAATTTCAGTTCATATTCATGAACTTCATCATGTAATGATGGAGCGAGCCAAGTGGAAAAGGGAATAAgctcgttaaaaaaaaaaagagtaaaagcCAGGGCGAGACATGAGGAAAGCTACAAGTGCTAACTTCTTCCCACTTCTTATGCTAACATGAACCGTGAAATTTTTCATCGGCTCAtacgaagtcttgccaacaTAAATTTCTACTACATGTTCATTTTCTACCATTGACATAAATACATAACTTCAAGAATGATGTTACTAACCTGATACAGATGCACAACAGCCGGGTTGAGCtcgaagattttcttttttttttagaacgaCGAGTCCATGAGTGTGTAGGTACATTAGAGTCGCAGGTGTGTGGATTGCTAGATTTAAACCAGGAATGCTTTCTGCAACTTTATTCACATTTAGGTACCAGACATTATTGTTGATCttcttgtgaattttttttgtatgtatttataaaaaaaaagtatgtttggaGATTTCTTTGGTGATTTAGGCCTGAATTATAGTATCACATATCTCTTGATGTCTTAATACCTTTTAgatcttgtaaaaaaaaaaaagtgtgaaaagtcaaccttttttttctttgtaaaaacaaaacaaaaaacacagaaaaattcCATGTCAGGtcacctgcttttttttaaagcaggatGTACTCTCCACCACTTttgtaaagggaaaaaaacaacactttttaatttgtatatttaactttttctttttgtaaacaGCATTTTGTGTTCTCGTTCGCCTTCCTCGTCCTGTGAGTTCTTGTGACAAAAACATGTACGTTCATTGTTCTTTCTAACTGCACTGTTTTCGTTGGGGCACTCACAAGAGCAATGTATCTTAGCGAACAaacttaaatgaaaaaaaaaggggtaaaacaaaaaaacagttccaCAAATATGCACCAGTATATTCTCACACGTTGAGTTCATTTTGTTACTTTGGTGATGACTGAGATGAATGATTGCTCATCATGTGGTTTGGGTGATTGATTATTTCTGAAATTAGGTTTTTAAGGTCACGTCAGGATGCCTCACAGTGGTGTTTAGGCGACTGGACGTGGGAAAAACGGCAGGGTAAAATAGATGAGAAtcaaattttgaattttgtCCCACTATGATGGTCCAATGCCATAAATTTAATACTTGGTTAaaatttttcacacacaaattgtTGAAAAgatggcaaaatattaatttaggtacaaaatatgaaaaatacagttttataagATTTTACACATTGCTCAGAAAACTAACTGGAGCACTACATGTGATGTTATTGCTAGCATCATTGCACACAACCTGCATTAATTACTTATGcaaaatgcatttaatgcaAATCACTTGAAATCCAGAATACAGAGTGGAAGTTGTGAAATTATGAAGTTCCTTCAGATTTATTTGcgaatttttttatttggatgtAACAAAGAGTTTCTTCAGTAGAGAAAAGAGCAACTCTCCTTGGGTACACATGGAGCCTTTGAGGTGGcatggtggttatttttattttaatttttttggaatGGCCATGAATTAGAATATTGAGGCCACAAACTAAGTATCTCATTGTCATGAATTACGTTGTAGCCACGAAATACTAAATTTGTGAAAAGTCATATTTAATAGGTAGCATCCAGTTAATTATTTGACTGGAACGGCTAAAAAAGTTGTTTAATAGTACATCCATATCGCATccaaatgtaatattattaatcataattGATTAGGTTCTTGTGGCTACAATTATATAATTCTATAGGTTTCTTatagtattataatataaaaagtaatataatattataatatattaaacttatagctttaatatattaatttgtggccacaccttattaaaaaaaataaccacctTTATTAATTACCCAACACATTAGTGGGTTTCCTTATGATTTATTCAGCAGATGAAGGATAAAGAACAACCGCATCACTGTATTTAGATTGTCCAATGTAGAAACCATCTATAGACTGTCTGGAAACATCTTATCAATAGATTTTCAAAACCATGCCATGAAAACTATCAGGAGAGTCCACATGAACTGAATTTGACATTGTGATAGGAGGAGGGACGGCTAGGGATGTTCTACTAGACATCAAGACCTCTAACCTGGACCATCCAAATGAAGCGATAGATAATCTACTAAAAATCACCAGTAAGtaactatgtaaggaataaaacacgatgggggtgtgcagttataggaaaagaatcaatgtcacaaagtgttttattcctcttaca

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255512 lncRNA upstream 68450 23388418 ~ 23389353 (+) True G215685
TU255511 lncRNA upstream 68568 23388418 ~ 23389235 (+) False G215685
TU255489 lncRNA upstream 91008 23366281 ~ 23366795 (+) True G215667
TU255488 lncRNA upstream 93223 23364358 ~ 23364580 (+) True G215666
TU255485 lncRNA upstream 98244 23356191 ~ 23359559 (+) True G215664
XR_004579448.1 lncRNA downstream 37360 23591868 ~ 23593648 (+) True LOC117599008
TU255659 lncRNA downstream 67864 23622372 ~ 23622609 (+) True G215824
XR_004579396.1 lncRNA downstream 193699 23748207 ~ 23751597 (+) True LOC117598845
TU255669 lncRNA downstream 193700 23748208 ~ 23751596 (+) False LOC117598845
TU255727 lncRNA downstream 364579 23919087 ~ 23920371 (+) False fbxl16
XM_026947085.2 mRNA upstream 102460 23342961 ~ 23355343 (+) True LOC113546963
XM_026947067.2 mRNA upstream 172183 23283248 ~ 23285620 (+) True atoh1b
XM_026947057.2 mRNA upstream 286954 23168344 ~ 23170849 (+) True LOC113546948
XM_026947060.2 mRNA upstream 294560 23160463 ~ 23163243 (+) True LOC113546950
XM_034310058.1 mRNA upstream 301095 23147197 ~ 23156708 (+) True LOC113546924
XM_026947010.2 mRNA downstream 158011 23712519 ~ 23730112 (+) True cpxm1b
XM_026947043.2 mRNA downstream 176946 23731454 ~ 23741390 (+) False LOC113546919
XM_034309817.1 mRNA downstream 187974 23742482 ~ 23748131 (+) True igfbp7
XM_034309675.1 mRNA downstream 213066 23767574 ~ 23772974 (+) True noa1
XM_026947012.2 mRNA downstream 219872 23774380 ~ 23778006 (+) True eef2kmt
TU255422 other upstream 287250 23137246 ~ 23170553 (+) True G215621
TU255420 other upstream 287585 23141752 ~ 23170218 (+) False G215621
TU255140 other upstream 621901 22835664 ~ 22835902 (+) True G215347
trnat-cgu_7 other upstream 677446 22780286 ~ 22780357 (+) False trnat-cgu_7
TU255135 other upstream 688176 22765814 ~ 22769627 (+) False higd2a
XR_004579446.1 other downstream 176946 23731454 ~ 23740984 (+) True LOC113546919
TU255678 other downstream 188047 23742555 ~ 23748067 (+) False igfbp7
XR_004579369.1 other downstream 637245 24191753 ~ 24327960 (+) False rbfox1
XR_004579370.1 other downstream 637245 24191753 ~ 24327960 (+) False rbfox1
TU256099 other downstream 902562 24457070 ~ 24458004 (+) True G216197

Expression Profile