RNA id: XM_034309713.1


Basic Information

Item Value
RNA id XM_034309713.1
length 2151
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC117598757
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1121166 ~ 1126092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCTCTTTTGTGCTTtcttgatgatggtggtgatattGAGAAGGTCAAAAGTGCATGATCAGTATTAGCAGGTGTGACACAAGTATCTCTTCCTGTGGCCTGAAACTCACTTGTGCtgtgttaattttaatttatcttAAAGGaggcagatttattttattacagatgctAAATGAACACCATGAAAAGTGTTTACAGAAACAGGACACACCCCAAAACCAGCCATGCTGCAGACACTTCTGATTTGGGCCATCGTTGCCAATTTGCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAATGTCACAATGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGATATGAGCTCCTGGATCCAGAACAACTTCTGCACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTCGGAAGTGCAAAATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGGCCCTGGTCAGCTCCAGCACCTCTTCTATTGAGAACAACTGGCAGTCAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCGAATATTCAATGCAGAAAACCAAAAAAGACAAGTTCAGCTTCACCAGTCATGCTGTCTCTTGTGGATACTACAAATACAGGGTTTCGAGCCATCCACTCCTGCACCCAGAGCTGATTAATGAATTCGGAAGTCTCCCTAAGACATATGATGAGTCTACAAAGCACCTCTATTTCAGGCTGATTGACAAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCACTCTGTGACCAGCATCAGGGAGTGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGATGAGGTGAAGATGTGTCTGGACGTGGAGGCTTCTGCCAGTACGGGAATAGCTGCAAACCTGCAGACTGAGGCTCATCACTGCAAGCAGGCCAAGGAAAAGACTCTGAGCAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTGATTGGTGGCTACACTCAGAGTGTTGACCTCCTTTTCTTGTCAAAAAATGACCCAAAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCACTCGAACCCCTTCACCGGTTGCTGCCAGCAAAGAAATCAATCCGAGTGCATTTGCGCAATGCCATCAAGGACTACATCCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCTCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGCAGCTGCAGCTGCCACAACAACCCAGGCGTGGCCCTCAACTGCTGCCCCACTCTGAGAGGATCTGCTCAAGTCACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTCACTCAGACAGACGGATTTGTCAAGATCCTCCTCAATGGACAGATCCCCAGAGGCCAGACATCTGTGATCCCGGATAACGACTCACCCTACTGGGACTGGGATTTCCATCTTGGAACTATGGACATTACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGACGAGGACAGTGATTCAGATGATGACCTTCTCGGGGCATGCAACGTTCCACTGAAATCTGGAGTGGAGAAGAATGCCTGTGCACTCAATCACGGAATGCTGTATTATAAAGTGCAGGTGAAGTGCATCCCTGGATTGACTGGTCCTTCATGCAGGGAGTACAATCCCTCTCCCATGGAGGCACAGCTAGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGTATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCGATTCAACCAGAGCAACATTCGCAAAGCTAAAGGTCTTGAATTGTAGACTAATTGTGTTCTTTGCGCAGCTATTGCATATTCACACCAGCTATCATAATGTTTAAGTAGAATAGGTGCACATAATATTGGCACATTATTACTAAACCTTTTCTGCTCATGTGTGCTGCCTATTGCCTTTTTAAAGCCTAATAAAAGTCTAATGAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241153 lncRNA downstream 9854 1111087 ~ 1111312 (-) True G203609
TU241085 lncRNA downstream 54346 1033889 ~ 1066820 (-) False si:dkey-66i24.7
TU241160 lncRNA upstream 5510 1129360 ~ 1130550 (-) False LOC113528609
TU241185 lncRNA upstream 114314 1238164 ~ 1241189 (-) True G203630
TU241258 lncRNA upstream 141812 1265662 ~ 1266354 (-) False G203695
TU241259 lncRNA upstream 220367 1344217 ~ 1345171 (-) True G203695
TU241318 lncRNA upstream 331337 1455187 ~ 1457398 (-) True G203739
XM_034309709.1 mRNA downstream 1435 1111509 ~ 1119731 (-) True LOC113528610
XM_034309710.1 mRNA downstream 1757 1111509 ~ 1119409 (-) False LOC113528610
XM_034309766.1 mRNA downstream 59487 1056370 ~ 1061679 (-) False LOC113528078
XM_034309765.1 mRNA downstream 59489 1056370 ~ 1061677 (-) True LOC113528078
XM_034309764.1 mRNA downstream 59496 1056370 ~ 1061670 (-) False LOC113528078
XM_034309715.1 mRNA upstream 2834 1126684 ~ 1130550 (-) True LOC113528609
XM_034309718.1 mRNA upstream 2834 1126684 ~ 1129606 (-) False LOC113528609
XM_034309716.1 mRNA upstream 2834 1126684 ~ 1129535 (-) False LOC113528609
XM_034309717.1 mRNA upstream 2834 1126684 ~ 1129507 (-) False LOC113528609
XM_026916422.2 mRNA upstream 20095 1143945 ~ 1148157 (-) True LOC113528091
TU241084 other downstream 74611 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241063 other downstream 209938 910117 ~ 911228 (-) True G203544
TU240992 other downstream 370367 741244 ~ 750799 (-) True G203488
TU241260 other upstream 141812 1265662 ~ 1345171 (-) False G203695
XR_003402975.1 other upstream 375411 1499261 ~ 1499350 (-) True LOC113528660
XR_003402974.1 other upstream 375665 1499515 ~ 1499605 (-) True LOC113528659
XR_004579451.1 other upstream 879684 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other upstream 879684 2003534 ~ 2007787 (-) False LOC113527889

Expression Profile