RNA id: XM_034309720.1


Basic Information

Item Value
RNA id XM_034309720.1
length 1945
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC113528092
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1176398 ~ 1178798 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acGACACAGTGAAAGTCCAGCCATGCTGCAGACACTTCTGATTTGGGCTGTCTTTGCCAATTTTCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAGTGTCGCAATGTCGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGACATGAGCTCCTGGATCCAGAACAACTTCTGCGCTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTAAGAAGTGCAAAATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGGCCCTGGTCAGTTCCAGCACCTCTTCTATTGAGAACAACTGGCAGTCAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCGAATATTCAATGCAGAAAACCAAAAAAGACAAGTTCAGCTTCACCAGTCATGCTGTCTCTTGTGGATACTACAAATACAGGGTTTCAAGCCATCCACTCCTGCACCCAGAGCTGATTAATGAATTCGGAAGTCTCCCTGAGACATATGATGAGTCTACAAAGCACCTCTATTTCAGGCTGATTGACAAGTTTGGTACTCATTATATCACAAAGGTGACTCTAGGTGGAGAGGTTCATTCTGTGACCAGCATCAAGGAGTGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGACGAGGTGAAGATGTGTCTGGATGTGGAGGCTTCTGTCAGTATGGGAATAGCTGCAAACCTGCAGACTGAGGCTCATCACTGCAAGCAGGCCAAGGACAAGACTCTGAACAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTGATTGGCGGCTACACACAGAGTGTTGACCTCCTTTTCTCATCAACTAATGACCCAAGGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCACTCGAGCCCCTTCACGAGTTGCTGCTGGCGAAGAAACCAATCCGAGTGCATTTGCGCAATGCCATCAAGGACTACATCCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCCCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGCAGCTGCAGCTGCCACAACAACCCAGGCGTGGCCCTCAACTGCTGCCCCACTCAGAGAGGATCTGCTCAAGTCACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTCACTCAGACAGACGGATTTGTCAAGATCCTCCTCAACGGACAGATCCCCAGAGGCCAGACATCTGTGATCCCGGATAACGACTCACCCTACTGGGACTGGGATTTCCATCTTGGAACTATGGACATTACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGACGAGGACAGTGATTCAGATGATGACCTTCTTGGGGCATGCAACGTTCCACTGAAATCTGGAGTGGAGAAGAATGCCTGTGCACTCAATCACGGAGTGCTGTATTATAAAGTGCAGGTGAAGTGCATCCCTGGATTGGCTAGTCCTTCGTGCACAGAGTACAATCCCTCTCCCATGGAGGCACAGCTGGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGTATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCACTTCAACCAGAGCAACATTCGCAAAGTTAAAGGTCTTGAATTGTAGACCAGTTGTGTTCTTTGTGCATCTATTGCATATTCTCATCATAATGTTTAAAGTAGAACAGGTGCACATAATATTGGCGTATTATTACTAAACCTTTCCTGCTCATGTGTGATGCCTTTTGCCTTTTTGAAAGCTTAATAAATGTCTCATGAAGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241160 lncRNA downstream 45848 1129360 ~ 1130550 (-) False LOC113528609
TU241153 lncRNA downstream 65086 1111087 ~ 1111312 (-) True G203609
TU241093 lncRNA downstream 132751 1041491 ~ 1043647 (-) True G203559
TU241087 lncRNA downstream 139767 1033889 ~ 1036631 (-) False si:dkey-66i24.7
TU241185 lncRNA upstream 59366 1238164 ~ 1241189 (-) True G203630
TU241258 lncRNA upstream 86864 1265662 ~ 1266354 (-) False G203695
TU241259 lncRNA upstream 165419 1344217 ~ 1345171 (-) True G203695
TU241318 lncRNA upstream 276389 1455187 ~ 1457398 (-) True G203739
TU241307 lncRNA upstream 320222 1499020 ~ 1500815 (-) True G203733
XM_034309767.1 mRNA downstream 26359 1148595 ~ 1150039 (-) True LOC117598761
XM_026916422.2 mRNA downstream 28241 1143945 ~ 1148157 (-) True LOC113528091
XM_034309715.1 mRNA downstream 45848 1126684 ~ 1130550 (-) True LOC113528609
XM_034309711.1 mRNA upstream 11658 1190456 ~ 1194184 (-) True LOC113528095
XM_026916428.2 mRNA upstream 11658 1190456 ~ 1194135 (-) False LOC113528095
XM_026916426.2 mRNA upstream 23630 1202428 ~ 1205204 (-) True LOC113528094
XM_026916425.2 mRNA upstream 29377 1208175 ~ 1216566 (-) True LOC113528093
XM_034309759.1 mRNA upstream 89584 1268382 ~ 1279552 (-) True LOC113528234
TU241084 other downstream 129843 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241063 other downstream 265170 910117 ~ 911228 (-) True G203544
TU240992 other downstream 425599 741244 ~ 750799 (-) True G203488
TU241260 other upstream 86864 1265662 ~ 1345171 (-) False G203695
XR_003402975.1 other upstream 320463 1499261 ~ 1499350 (-) True LOC113528660
XR_003402974.1 other upstream 320717 1499515 ~ 1499605 (-) True LOC113528659
XR_004579451.1 other upstream 824736 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other upstream 824736 2003534 ~ 2007787 (-) False LOC113527889

Expression Profile