RNA id: XM_034309735.1


Basic Information

Item Value
RNA id XM_034309735.1
length 3148
RNA type mRNA
GC content 0.51
exon number 8
gene id syt17
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 889261 ~ 911910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGTGATTCCGTGTGTCAGATCTGGAGTTGGTGGTCGGCATCATTCCCAGAGCAGGATTTGTAAAGGATTTGTGAATTGTCAACGGAAGATCCCAGAATCCAGCCAGAACTCCAtcaggaggtttttttttttcttcctccacttTGCTcctggtttctttcttttatttccgTGTTGGTTTttccagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaggaaccTGGGGGAGAACCATGTCGCTGTGGATGGGAAGTGAGAAGGCGGGGAGGGAGTGAGGACAGGATGGCGTACACACAGCTGGAACCCGTCAATGAGGGTCTGCTGTCTACACTGACGGATCTCCTGCTGTGCCGCTGGTCGTGTCGATCATGTTGGCAGTGGTGTTGGGAATGTAGCTGCTGTCAGACCACTGAGGAGGAAGTGGAGATTCTGGGGCCGTTTCCTGCACAGACGCCCTCCTGGCTtgttaatgacTGTAACAATGAGAAAGAGTCGAACTCTCACCCGGTGTCGCGTGATCACGTCCCTCCGGCCCACAACAACATCACGGACAGCAGCAGTCCGAGCTGCACCAGTCCCGGCAGCCGGGGCTCCGGCTCGGAGAACTCTCGCTCCACCTTCAGCCTCGCACGCCAGCTCTCCAGTCTGGACTCGCGGCGTCCCAGCTCCCCGCTGGTGGACACGAAGCCCATTGAATTCTGGGCCATGTCCCCGAGGAAGGAGGCGGTTCAGCCCCTGCGTAAACCGCAGCCTCCCCCGGACGACTATTTCCGCAAGCTGGAGCCGCGACTGTACTCGTCCGAATCCGGCGGAGATGACGTAGACTCTCTGAGCGACGAGGAGCTCCTCCTGCGCTACCAGCTCGGCCTCCTGCACTTCAGCACGCAGTACGACCTCGTGCGCTGTCAGCTGATCGTGCGTGTGATTGAGGCGCGGGACCTGCCTCCTCCCGGCGCGGGCGTGGCTCACTCCAACCCCTACGTCAAGATGAGCCTCCTGCCTGACCACAAGAACTCGCGGCAGACCGGCGTCAAGCGCAAGACACAGAACCCTGTGTTCGAGGAGCGCTTCACCTTCGAGCTGCCCTTCCTCGAGGCCCAGCGCCGGACGCTGCTGCTCTCCGTGCTGGACTTCGACAAGTTCTCACGCCACTGCGTCATAGGCAAAGTGACGCTCCCGCTCAGCGAGGTGGACCTGGTGAAGGGGGGACACTGGTGGAAGGCTCTCGTGCCCAGCTCCCAGaaCGAGGTAGAACTCGGGGAACTGCTGCTGTCCTTAAACTACTTGCCGAGCGCCGGACGACTCAACGTGGACGTCATCAGGGCCAAGCAGCTGCTGCAGACTGACATGTGCCAGGGTTCAGATCCCTTTGTGAAAGTTCAGCTGGTGGCAGGACTGAAGCTGGTGAAGACGAAGAAGACGTCGTGCATGAGGGGAACCATCGACCCTTACTTCAACGAGTCCTTCAGCTTCCGGGTGCCTCATGAGGAACTGAGCGAGGTTAGCCTCGTGTtcacagTTTACGGCCACAACATGAAGAGCAGCAACGACTTTGTGGGCCGCGTCGTGATTGGTCAGTTCTCCACGGGGCCGGCCGAGACCACGCACTGGCGGCGTCTGCTGCGTTCCCAGCGCACGCCCGTGGAACAGTGGCACAGCCTGCGGTCCCGCGCCGAGTGTGACCGCGTCTCTCCCGCCTCACTCGAGGTCACGTGATCCTCACGCAGCACGCCGATTGGTGGAGGCAGGAAGTGTGGACCATTTAATGGGCGGGGTTTCACTTGAAGGACAAACAATAAGAAGAACTGTGGTGATCTGAATGGACTGTGGGTTTTGGAACCGGCTCGTGTTCTGCTCTGGAGTTCGTGAACTTTATTTGGAAAGCTGGACTGCTGAGAAAGTGTTTTTCCGGCGACGCAGCTGAGCATTTGTTCTTTATCACACTGATATTATCATCATGGAGAACATAATAACCTCATCATTGGCTCGGCTCAGGCTGAGATCAGTGGGAtcattcctcctcctcctcctcctcctcctcctcctcctgttacGGGACGTGGCGTTGCTTCTATTAATCAGCtgattgggtttttttttaaaggtatttaGAAATTAATCAGTAATAACGTGGCTGTTGCTTTCAGTTCCACACCATAGACTCCATCTGTGTGATATAAAATTCTGTGAAAATAATAAGGCATAAGATCATGATGATATATTTTCacagggtttgtttttttgtgaccATCAGTGCAGGAGGTAAAACGGTGAAAAGTGtcattactgtaaaaataagtgtccaatcaaatcagctcctctcatcCCCTTTAAAATtaactgtccaatcaaatcagctcctctcatcCCCTTTAAAATtaactgtccaatcaaatcagctcctcttCTCCCCTTTAAAATtaactgtccaatcaaatcagctcctcttCTCCCCTTTAAAATTAACTGTCCAATtaaatcagctcctctcatcccctttaaaaataactgtccaatcaaatcagctcctctcatcCCCTTTAAACAtaactgtccaatcaaatcagctcttCTCATCCCCTTTAAAATtaactgtccaatcaaatcagctcctctcatcCCCTTTAAAATtaactgtccaatcaaatcagctcctctcatcCCCTTTAAACAtaactgtccaatcaaatcagctcctctcatccaatttaaaattaactgtccaatcaaatcagctcctctcatcCCCTTTAAACAtaactgtccaatcaaatcagctcttCTCATCCCCTTTAAAATGAACTGTCCAATCAATTCAGCTCCTCTCATCCAATTTAAAATtaactgtccaatcaaatcagctcctctcatcCCCTTTAAACAtaactgtccaatcaaatcagctcttCTCATCCCCTTTAAAATtaactgtccaatcaaatcagctcttCTCATCCCCTTTAAAATTAACTGTCCAttcaaatcagctcctctcatcCCCTTTAAACATAACTGTCCAATCAATTCAGCTCCTCTCATCCCCTTTAAACAtaactgtccaatcaaatcagctcctctcatcCAATTTAAAATTAACTGTCCAATCAATTCAGCTCCTCTCATCCCCCT

Function

GO: NA

KEGG:

id description
K19915 SYT17; synaptotagmin-17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240833 lncRNA upstream 4895 817391 ~ 884366 (+) True G203357
TU240820 lncRNA upstream 82916 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA upstream 83406 805200 ~ 805855 (+) False setd1a
TU240807 lncRNA upstream 115237 771771 ~ 774024 (+) False fus
TU240804 lncRNA upstream 145521 741832 ~ 743740 (+) True G203339
TU240787 lncRNA downstream 146769 1058679 ~ 1060521 (+) True G203327
XR_004579335.1 lncRNA downstream 149280 1061190 ~ 1078426 (+) True LOC117598762
TU240861 lncRNA downstream 198619 1110529 ~ 1110847 (+) True G203385
TU241190 lncRNA downstream 397487 1309397 ~ 1312989 (+) True G203635
TU241208 lncRNA downstream 450473 1362383 ~ 1441015 (+) True G203647
XM_026915992.2 mRNA upstream 6619 865213 ~ 882642 (+) True LOC113527857
XM_034309744.1 mRNA upstream 39381 812026 ~ 849880 (+) False hsd3b7
XM_034309745.1 mRNA upstream 39381 818661 ~ 849880 (+) False hsd3b7
XM_034309746.1 mRNA upstream 39381 823974 ~ 849880 (+) True hsd3b7
XM_034309704.1 mRNA upstream 83108 778913 ~ 806153 (+) False setd1a
XM_034310159.1 mRNA downstream 29110 941020 ~ 997685 (+) True smg1
XM_034309756.1 mRNA downstream 88179 1000089 ~ 1014745 (+) True arl6ip1
XM_034309762.1 mRNA downstream 110016 1021926 ~ 1034215 (+) True elob
XM_034309708.1 mRNA downstream 122426 1034336 ~ 1056334 (+) False armc5
XM_026916384.2 mRNA downstream 125241 1037151 ~ 1042450 (+) False LOC113528077
TU240808 other upstream 131203 753275 ~ 758058 (+) False fus
TU240780 other upstream 156407 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 178818 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 212422 672224 ~ 676839 (+) False thoc6
TU240520 other upstream 361641 524812 ~ 527620 (+) False LOC117598976
TU240783 other downstream 134895 1046805 ~ 1051139 (+) False armc5
TU240880 other downstream 308602 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 441424 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 649684 1561594 ~ 1591075 (+) False syt3
TU241504 other downstream 971165 1883075 ~ 1885478 (+) False ccndx

Expression Profile