RNA id: XM_034309744.1


Basic Information

Item Value
RNA id XM_034309744.1
length 2379
RNA type mRNA
GC content 0.46
exon number 6
gene id hsd3b7
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 812026 ~ 849880 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaaaataaaaatgagaggaAGCAGAATGTTTGTGCAGAAGCGAGACAGAAATTGAGAAGAGCGTCGTCTGGTTCATGAgAAGCACAGCAGCACGCGCTCAGAGGAACACTGAAACCTCCTCGCGCTCCAAGAGAACCTCGTCTCCAGCGGCTCCACGCAGGAAGAAACCATGAGCAGCACGAACCCCGGGCTGGTTTACCTTATGACAGGAGGATGTGGATTTCTGGGGCAGCACCTGCTGAACGTTCTGCTGGAGAAAGAGCAGAATGTGAAGGAGATCCGGCTCTTCGATAAGAACATCGACTCCAGCCTGGAGGACCTCAGCACAGGGACAGAAAACGTGATTAATGCGTGTAAGGAGCTCGGGATTCAGCACCTGCTCTACACCAGCAGTATGGAGGTGATCGGACCCAACGTGAGGGGAGACGCCTTCATCAGGGGAAACGAGGACACGCCGTATAACGTGTGTCACGAAATGCCATATCCCAAGAGTAAAGCTGAGGCAGAGAAACTGGTGCTGGAAGCCAATGGCACCAAgGTTGCAGGCGGTGCGTCTCTGTACACGTGTGCGCTGCGTCCCACAGGGATTTACGGTGAAAACCACCAGCTGATGAAGGATTTCTACATGATGGGTGTTCGCACGGGCGGCTGGCTCATTAAAGGAGTTCCGCGAGACACCGAGCACGGACGTGTTTACGCAGGAAACGTAGCGTGGATGCACACGCTGGCAGCGCAGGCTTTACGCGAGCATCCCGAGCGACTCGGGGGTGAAGCGTACTTCTGCTACGACGATTCTCCCTACAAGAGCTACGAGGAATTCAACATGCAGTTCCTGTCTGCGTTTAACTTCCGCTCGCTGCGCATGCCGCTCTGTGTGCTCTGGATGCTGGCGTGCTTAAACGAGCTGCTGCACTGGCTGCTGAAGCCCGTGCGCGACTTCACGCCGCTGCTGAACCGCTACACGCTGGCCGTCGCCACCACCTCCTTCACCGTGCGCACGGACAAGGCGCTGCGCCACTTCAACTACCGCCCGCTGTACGACTGGCAGCAGTGCCAAGCTCGCACGCAGAAGTGGGTGGACACGTTCCCTCTGAAAACCAGAGGCAAGGACGCATGAGGACGGGGAACATCAGGAGACACGAAGACAGACtgagatcatcatcatcatcatcattctatacatacacacacataatacacagtGGACACAAATGCCAGGGACTAATGAAACAGGAAGGGAGTAGTGTCTTAGTGTCTTAGTGTCTTAGAGTCTTAGAGTCTTAGTGTCTTAGTGTCTTAGTGTCTTAGTGTCTTCGTTCTGTTTCCCGtttataatattaacaatataattATCTTCCTCCTTCCAAAGGATTTGTAATTGTGTGGACACGCCCATTTTTAATCATCAGGAACATAaacagtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtgaggggggtgTCAAGATTTTTAAGAGAATCACTGGACTAATcagtcattattatttaaaaacgaATCAAACTCTTTCAGACAGGTTTATTACTCTAACCAGGTGGATGTTTTAACCGTGACGCACTGCTGCTTAGTGCgtttatttaatcataaaatcCACAGTCTACACGTTATCCTTATATTCCATAGCCAGAGACACGTGAGGCCAAAGAAACATACAGAAAGAGGATGGAGAGGACGTTAAAGTCGTGGACTTGTGAAGGAAGTTAGTTTTGACCCGTTTGTCTGTAAAAGACGTGTTGCAGTACGTTTTCCCACAGTGTTGtcgagttctggattctgattggtcagaaggtgctgagcgttgtcctataacagcgtgcTGCGTTAGGTTTTATTCCgtacttaataataaaaaaaaatgggcagACACATTCCCCTGAGCAACACCtaaatctaaagaaaaaaaaatgtcaccagGGCAAAGCTATTTTTGTAAACtgaatttattactattttattttttattgctaaTATAGAGAAGCCTCTCAGAGTGACTCGTTATTAACAGGTGATTTTAGAGAATTCAGATGTTTCGATTTACACTCCAAGCATCATTTTACTTTTGCTAATGTTTCTTTGACCTACTCACGTGTTAGCATTAATCCGTGTGTTTATAATAGACATTAACCCTATAGGTTCTGTATCTGAGACGGCATTTACACTTTTCACATATTTAACACAAGAAAGACAAAAACTCTTCCtacctctttctctccatctgccTAATTAAATCACTTCACTTCTAATAATTTGAtttgaaattcttcttttttttgtcatttgtttgacgtggcaaaaaaaaatgctcaagatagtttaaatcattaaaaatatatatat

Function

GO:

id name namespace
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240820 lncRNA upstream 5681 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA upstream 6171 805200 ~ 805855 (+) False setd1a
TU240807 lncRNA upstream 38002 771771 ~ 774024 (+) False fus
TU240804 lncRNA upstream 68286 741832 ~ 743740 (+) True G203339
TU240781 lncRNA upstream 73299 738339 ~ 738727 (+) True G203321
TU240787 lncRNA downstream 208799 1058679 ~ 1060521 (+) True G203327
XR_004579335.1 lncRNA downstream 211310 1061190 ~ 1078426 (+) True LOC117598762
TU240861 lncRNA downstream 260649 1110529 ~ 1110847 (+) True G203385
TU241190 lncRNA downstream 459517 1309397 ~ 1312989 (+) True G203635
TU241208 lncRNA downstream 512503 1362383 ~ 1441015 (+) True G203647
XM_034309705.1 mRNA upstream 5873 778840 ~ 806153 (+) False setd1a
XM_034309704.1 mRNA upstream 5873 778913 ~ 806153 (+) False setd1a
XM_034309703.1 mRNA upstream 5873 778943 ~ 806153 (+) True setd1a
XM_034309721.1 mRNA upstream 37776 753067 ~ 774250 (+) True fus
XM_034309754.1 mRNA upstream 79136 726729 ~ 732890 (+) True si:dkey-16l2.17
XM_026915992.2 mRNA downstream 15333 865213 ~ 882642 (+) True LOC113527857
XM_034309735.1 mRNA downstream 39381 889261 ~ 911910 (+) True syt17
XM_034310159.1 mRNA downstream 91140 941020 ~ 997685 (+) True smg1
XM_034309756.1 mRNA downstream 150209 1000089 ~ 1014745 (+) True arl6ip1
XM_034309762.1 mRNA downstream 172046 1021926 ~ 1034215 (+) True elob
TU240808 other upstream 53968 753275 ~ 758058 (+) False fus
TU240780 other upstream 79172 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 101583 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 135187 672224 ~ 676839 (+) False thoc6
TU240520 other upstream 284406 524812 ~ 527620 (+) False LOC117598976
TU240783 other downstream 196925 1046805 ~ 1051139 (+) False armc5
TU240880 other downstream 370632 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 503454 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 711714 1561594 ~ 1591075 (+) False syt3
TU241504 other downstream 1033195 1883075 ~ 1885478 (+) False ccndx

Expression Profile