RNA id: XM_034309758.1


Basic Information

Item Value
RNA id XM_034309758.1
length 2115
RNA type mRNA
GC content 0.38
exon number 3
gene id LOC113525779
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1282400 ~ 1294239 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagatagacgcTTCCTTTTACCTCCAGCTCAAAGACACCTCTCCCtgtcttcttccttttctccttctGTCCTCTTCGTCAGGAACCGTACCCAGAACCGGATCTGAACCTCTGTCCCACCTCCAGCTGCAGgaTGGAATGTAAACGAAtacaggttgtgtgtgtgggtttgggaATTCTGGGCCTCATTGCTGCCATCATCACCTGCGCCCTCCCCAGCTGGACGGTTTCCTCCTTCACCAGACACTACATTGTCACAGCAatgATATCGCATGAAGGTCTGTGGATGGGGTGTGTGTACCAGAGCACGGGCCAGTATCAGTGTAGAGCCTACGATTCACTGCTGATCCTGGCCTTGGACATCCAGGCAGCTCGTGCCATGACCATCGTGTGCTGCATAGTGACGGTGATCTCCCTGCTGCTCGTCATGTGCATCAAAAATGAATACACCAAGCCAAAGATCTTCCTGGCGGCTGGTGTGGGCATGCTCATAGCCGGCGTGCTGCTCATCATCCCTGTCAGCTGGACAGCCAACAACGTCATGAGAGACTCCAAAAACCCGCTGGTATCAAGCCACAGAGAGATCGGACTGTGCATCTATATTGGCTGGGCCGGAGGAGTGCTCCTCCTGCTGGGCGGAGGACTGCTGTGCTGCTTCAGCCGCCCGCGATCCGGAGGCACCACCAAGTACTACAGCGACAACACCTCAACTCTGGTTATCTATGTAAATGACATCTGAAATAGTGAACATTTCAGGTAGAGGTTTGACGATGTGTTGGTATAAAAGCATAATAAGAAAAAGGGGCGGGGCATTTCAGAATGGGGATTCAACTAAATGTAGCAAATACTCCAATTAGGCAGGTTTATCAATATAACACAGTTAtaaaaatttctaaaatataaatatgtaaaatagtaACCACTCTTAATATTACCATTAATACTAAGCTATCAAAAATATTCCTTTTGTTCAAAATTGTTCAACCtgctacattattattatttttttttttcctctctttattgacttttcttatttttgaccCATTAACAAAAGAACACATGAACAGGTACACCTGCACTCAACCTTCTATACATACagtttacataaattaaatactacaataacaaattataataaaaaaaaaaataataataataaataaaataaataaataaataaataaaaaaagtacaataataaataataagtacatAATAAATCAATAGATGTATTTTCAACGTTTACAATGCCAAGTAAACATCAGTATAATGTTAAGTAAAGTCTATATCCCCACTTACATGATATTCATGTATGGTTCCCAAAGCCGATCAAAATCTTTTCGCTTGCCCTTTGCAATATAAGTTAGTCTCTCCAGTCCGATACAGTTCAAGATCtcctttttccacattttcaagGATGGAGCGTCCATGCTCTTCCAACACAATGCAATAGCTCTCCTGGCTTGGAGAAGACCGAAATCTAGGAGCTTAGTTTGTTTCAAAGTAAAATCCAATGGATATATTCCAAGAATACAGAGTTTAACATTCAAAGGAATTTGGACATTGAATATGTCTGACATACATGTAATAACCTCTTTCCAAAATTGTTTTACTTTTGAACATTCCCAAAGGCAATGGTATAATGTGCCCTTCTCATCCAAACATTTAGAGCACACATCTGGGATGTTACCAGACATATGGTGAAGCTTAACAGGAGTTATGTAGGTTCTCATTAACCATTTATATTGAAGTAATTTAAaccttgtatttattgtttgtgtttgtgcttttaGACATGCATCTTTCCAGTCTGCTTCATCTATATCTTCATTCATATCCAATTTCCAAGCATTTAATTTATCTAATGTTGACTCAGTACTATATTTAACCAATAAATTGTAATACCTAGATATATGCCCCCTTCCTTCTAAATTTCCGAGAGTTGTTTCCTCTAGTTATGATAAAGATGGTATACAACTTATCTGTTCCTTTTTTGATgacaaaaaactttttaactgtaaatatttaaaaaaatgttttttggggATTAAATATTTCTGGCATAAATGATCAAAGGGAAGTAAAACTCCATCTTCATATAAATCCA

Function

GO:

id name namespace
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241258 lncRNA downstream 16046 1265662 ~ 1266354 (-) False G203695
TU241185 lncRNA downstream 41211 1238164 ~ 1241189 (-) True G203630
TU241160 lncRNA downstream 151850 1129360 ~ 1130550 (-) False LOC113528609
TU241153 lncRNA downstream 171088 1111087 ~ 1111312 (-) True G203609
TU241093 lncRNA downstream 238753 1041491 ~ 1043647 (-) True G203559
TU241259 lncRNA upstream 49978 1344217 ~ 1345171 (-) True G203695
TU241318 lncRNA upstream 160948 1455187 ~ 1457398 (-) True G203739
TU241307 lncRNA upstream 204781 1499020 ~ 1500815 (-) True G203733
TU241309 lncRNA upstream 204781 1499020 ~ 1500815 (-) False G203733
TU241338 lncRNA upstream 212962 1507201 ~ 1527141 (-) True G203756
XM_034309759.1 mRNA downstream 2848 1268382 ~ 1279552 (-) True LOC113528234
XM_034309760.1 mRNA downstream 6201 1268382 ~ 1276199 (-) False LOC113528234
XM_026916425.2 mRNA downstream 65834 1208175 ~ 1216566 (-) True LOC113528093
XM_026916426.2 mRNA downstream 77196 1202428 ~ 1205204 (-) True LOC113528094
XM_034309711.1 mRNA downstream 88216 1190456 ~ 1194184 (-) True LOC113528095
XM_034309793.1 mRNA upstream 8162 1302401 ~ 1306363 (-) True LOC113528189
XM_026916145.2 mRNA upstream 15649 1309888 ~ 1316175 (-) True LOC113527946
XM_034310229.1 mRNA upstream 473067 1767306 ~ 1812044 (-) False mybpc2a
XM_034310228.1 mRNA upstream 473067 1767306 ~ 1812044 (-) False mybpc2a
XM_034310227.1 mRNA upstream 473067 1767306 ~ 1812044 (-) True mybpc2a
TU241084 other downstream 235845 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241063 other downstream 371172 910117 ~ 911228 (-) True G203544
TU240992 other downstream 531601 741244 ~ 750799 (-) True G203488
XR_003402975.1 other upstream 205022 1499261 ~ 1499350 (-) True LOC113528660
XR_003402974.1 other upstream 205276 1499515 ~ 1499605 (-) True LOC113528659
XR_004579451.1 other upstream 709295 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other upstream 709295 2003534 ~ 2007787 (-) False LOC113527889
XR_004579338.1 other upstream 1305470 2599709 ~ 2600352 (-) True LOC117598767

Expression Profile