RNA id: XM_034309761.1


Basic Information

Item Value
RNA id XM_034309761.1
length 1482
RNA type mRNA
GC content 0.48
exon number 5
gene id clec19a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 920007 ~ 931906 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtctctctctctctctctctctctctctctgagtagGAAGAGTCTGGCAGAGGATTTAGGAGTCTCGCCCACCCTCTGATCGATCCCAGTCTCCACACAGCCGTGttgtacgcacacacacacacacacacacacacacacacacacacacacacacacactcggccaCATTGCAGTGTGTGAAAATGCTCTGGTGTGGATTGTGCTTGGCCCTGTGGCTCAGCAGCGTGCCGCTTTGGGCTCTTCCCTCCACCAGCATGAAGATCACTCAGGCTCTGCCTCTGCAGCTTCCTGACTCGAGTCAGCCCGCCGTCTGTCCGCTCTTCTGGACCGAGTTCGATGGCTACTGCTACCGTTTCTTTCCCCTGAACCGCACGTGGGCCGAAGCCGACCTGTACTGCGCCGAGTTCTCTAACGGTCACCGGTCAGGAAAACTCGCCTCCATACACAGCTGGGAGGAGAACGTGTTCGTGTACGATCTGGTGAACAGCCGCGTGCCGGGAATCCCGACGGATATCTGGATCGGCCTGCACGACCGGAGACAGGAGGGCACCATGGAGTGGACGGACGGATCACCGTATGAGTATAACTACTGGGACGGAAACCAGCCGGACGATGGAATCCACCGTATCTCTGAGGAGGAGGACTGTGTGGAGGTCTGGTACAGACAGAACAGCGcaCTCAGGTCCTGGAATGACAACAGCTGTGACAAAGCTTTTCCTTTTGTGTGTAAAATCCCCATGCTGGAGCACTAACGTCCTGCACTGAGCTCATTACTGAGACAcggccctcacacacacacacgccacgcACAACACTGCTGCTGAGAGCAACGTCCATCTGGGCTTCATTTAAACTAGTGACTCATCTCatcacactcacagacacacacacacacacacacacagtggcttgcataagtattcacccccttgactGTTTCCCTGGTTGTGTAGTGTTATaatctggccctgaaattaatttaatcaaGATTTTTTCaagtcatgaatctacacaaaaaacCCATAATATTAAATCAGTATAAACTGTGAaacttatttacaaaaaaaaccaataaaatttgcACGACTgcacaagtattcacccctttaCTGTGAAACTCCTAAATTAGTTCTAGAGTAACCAGTTACCTCCAGAAGTCATATAATTAGTTAAATGGAGTCGACCTGTGTGCCGTTAAAGTGTCACATGCTCTGCTCTCAGTATAAATAAACCTGCTTCTGTTCCTGGAATGGAATCCAGAGTTTGTTAGGGAACATATCTAAACAAACGGCATCATGAAGAGCAAGGGGAgatcaaaacaagtctgggacaaagttctggaaaagtatcaatgaGGGTTTGGTTATGAAACTTGGAACATCTCACTTAAATCACACTTAAtcccttatttaaaaaaaaaaagttaagaatACAGCACAACTATGGCTCTTGGGATTAGTAAGAGCAGCAACCAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241064 lncRNA downstream 6446 911956 ~ 913561 (-) True G203545
TU241062 lncRNA downstream 16675 903037 ~ 903332 (-) True G203543
TU241032 lncRNA downstream 35595 817570 ~ 884412 (-) True G203513
TU241026 lncRNA downstream 70142 791957 ~ 849865 (-) False G203510
TU241024 lncRNA downstream 70142 848204 ~ 849865 (-) True G203510
XR_004579337.1 lncRNA upstream 7602 939508 ~ 940343 (-) True LOC117598764
TU241090 lncRNA upstream 15824 947730 ~ 1036631 (-) False si:dkey-66i24.7
TU241099 lncRNA upstream 22778 954684 ~ 956624 (-) True G203564
TU241118 lncRNA upstream 48466 980372 ~ 981015 (-) True G203577
TU241085 lncRNA upstream 101983 1033889 ~ 1066820 (-) False si:dkey-66i24.7
XM_034310158.1 mRNA downstream 167764 750063 ~ 752243 (-) True LOC117598979
XM_034310157.1 mRNA downstream 169549 739668 ~ 750458 (-) True LOC117598978
XM_034309729.1 mRNA downstream 275421 642509 ~ 644586 (-) False si:ch73-248e21.5
XM_034309730.1 mRNA downstream 275421 642509 ~ 644586 (-) False si:ch73-248e21.5
XM_026911438.2 mRNA downstream 275421 642509 ~ 644586 (-) False si:ch73-248e21.5
XM_034309753.1 mRNA upstream 112363 1044269 ~ 1046535 (-) False si:dkey-66i24.7
XM_034309766.1 mRNA upstream 124464 1056370 ~ 1061679 (-) False LOC113528078
XM_034309765.1 mRNA upstream 124464 1056370 ~ 1061677 (-) True LOC113528078
XM_034309764.1 mRNA upstream 124464 1056370 ~ 1061670 (-) False LOC113528078
XM_034309709.1 mRNA upstream 179603 1111509 ~ 1119731 (-) True LOC113528610
TU241063 other downstream 8779 910117 ~ 911228 (-) True G203544
TU240992 other downstream 169208 741244 ~ 750799 (-) True G203488
TU240991 other downstream 170646 742693 ~ 749361 (-) False G203488
TU240994 other downstream 176614 741397 ~ 743393 (-) False LOC117598978
TU240668 other downstream 430276 486222 ~ 489731 (-) False G203254
TU241084 other upstream 112831 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241260 other upstream 333756 1265662 ~ 1345171 (-) False G203695
XR_003402975.1 other upstream 567355 1499261 ~ 1499350 (-) True LOC113528660
XR_003402974.1 other upstream 567609 1499515 ~ 1499605 (-) True LOC113528659
XR_004579451.1 other upstream 1071628 2003534 ~ 2007788 (-) False LOC113527889

Expression Profile