RNA id: XM_034309773.1


Basic Information

Item Value
RNA id XM_034309773.1
length 6991
RNA type mRNA
GC content 0.46
exon number 24
gene id LOC117598765
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2914258 ~ 2983091 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACTTCAGTTTGTATAAAACTGGGACATCAATAATGACACAAACTGCAGATTCTACAACAACATTTACTCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGTCTATTCATACAGGGAAAGTACCTCCATATCATCCAGGAGCAACTCCATTAACATCACTGTAGTAAACTTACAGCAGCCCAACATCTCCTTCACTGCCACTGGTGGATGGTTCCACTGGGGGCCTAACGGACCAGAAGTGACTATTGGCTACGGATTCTCCGTCATTTGCTCCATTAAAGCTCAGTATCCAGGAGGTTCCTTTCACTTGGCGATCAGCGGATCCAACATCACCAGGACTCAGTCAGCTGTTAATCACTCAGCTGTCTTCCTTTTTCCTAAGGCAGATTGTGTCCATCAGGGAAACTACAACTGTACTTATGAAGTTAACGTGTCTTCACGTACCTTTACTTCCACCAAACTGCTGGCCATCACTGTGAAagGCTGTTATGAGATCAGAGTGGTGAATGGGCCGAGGAGCTGTTGCGGTCGAGTGGAGATCCAGCACAGAGcccagtggggaacagtgtgtgatgatgattgGGACTTAAAGGATgcagaggtggtgtgtgagACAGCTTGGATGTGGTAAAGCCGTCAGCGCTCCTCAAAGTGCCCACTTTGGCGAGGGAAGTGAACCAACCTGGCTGGATAATGTGCAGTGTAATGGAACTGAGAGCTACATAGATCAGTGCTCACACAATGGATTTGGAATAGAGAACTGTGGACAtggtgaagatgctggagtTGTGTGCTCAAACTTGCAGGCTCCCACATTGACTTGGATCTCCCCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGCTCACATGTACCACACCCGCCCAACGTGCATCTCTGTAGACTTCAGTTTGTATAAAACTGGGACATCAATAATGACACAAACTGCAGATTCTACAACAACATTTACTCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGTCTATTCATACAGGGAAAGTACCTCCATATCATCCAGGAGCAACTCCATTAACATCACTGTAGTAAACTTACAGCAGCCCAACATCTCCTTCACTGCCACTGGTGGATGGTTCCACTGGGGGCCTAACGGACCAGAAGTGACTATTGGCTACGGATTCTCCGTCATTTGCTCCATTAAAGCTCAGTATCCAGGAGGTTCCTTTCACTTGGCGATCAGCGGATCCAACATCACCAGGACTCAGTCAGCTGTTAATCACTCAGCTGTCTTCCTTTTCCCTAAGGCAGATTGTGTCCATCAGGGAAACTACAACTGTACTTATGAAGTTAACGTGTCTTCACGTACCTTTACTTCCACCAAACTGCTGGCCATCACTGTGAAagGCTGTAATGAGATCAGAGTGGTGAATGGGCCGAGGAGCTGTTGCGGTCGAGTGGAGATCCAGCACAGAGcccagtggggaacagtgtgtgatgatgattgGGACTTAAAGGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAAAGCCGTCAGCGCTCCTCAAAGTGCCCACTTTGGCGAGGGAAGTGAACCAACCTGGCTGGATAATGTGCAGTGTACTGGAACTGAGAGCTACATAGATCAGTGCTCACACAATGGATTTGGAATAGAGAACTGTGGACAtggtgaagatgctggagtTGTGTGCTCAAaCTTGCAGGCTCCCACATTGACTTGGATCTCCCCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGTTCACATGTACCACACCCGGCCCAACGTGCATCTCTGTAGACTTCAGTTTGTATAAAACTGGGACATCAATAATGACACAAACTGCAGATTCTACAACAACATTTACTCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGTCTATTCATACAGGGAAAGTACCTCCATATCATCCAGGAGCAACTCCATTAACATCACTGTAGTAAACTTACAGCAGCCCAACATCTCCTTCACTGCCACTGGTGGATGGTTCCACTGGGGGCCTAACGGACCAGAAGTTACTACTGGCTACGGATTCTCCGTCATTTGCTCCATTAAAGCTCAGTATCCAGGAGGTTCCTTTCACTTGGCGATCAGTGGATCCAACATCACCAGGACTCAGTCAGCTGTTAATCACTCAGCTGTCTTCCTTTTTCCTAAGGCAGATTGTGTCCATCAGGGAAACTACAACTGTACTTATGAAGTTAACGTGTCTTCACGTACCTTTACTTCCACCAAACTCCTGGCCATCACTGTGAAagACTTGCAGGCTCCCACATTGACTCGGATCTCCCCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGTTCAGATGTACCACACACAGCCCAACATGCATCTCTGTAGACTTCAGTTTGTATAAAACTGGGACATCAATAATGACACAAACTGCAGAGTCTACAACAACATTTACTCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGACTATTCATACAGGGAAAGTACCTCCATATCATCCAGGAGCAACTCCATTACGATCACTGTGGTCCATAATGGGACCAGGCTGGTGAATGGTCCACGTAACTGTTGTGGTCGAGTGGAGATCCAGCACAAAGcccagtggggaacagtgtgtgatgatgattgGGACTTAAAGGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAAAGCCGTCAGCGCTCCTCAAAGTGCCCACTTTGGTGAGGGAAGTGAACCAACCTGGCTGGATAATGTTCAGTGTACTGGAACTGAGAGCTACATAGATCAGTGCTCACACAATGGATTTGGAATAGAGAACTGTGGACAtggtgaagatgctggagtTGTGTGCTCAAACTTGCAGGCTCCCACATTGACTCGGATCTCCCCAAACTCTGTGCTCTCACCTGGAGAAGTCCTTCAGTTCACATGTACCACACCCAGCCCAACATGCATCTCTGTAGACTTCAGTTTGTATAAAACTGGGACATCAATAATGATACAAACTGCAGAGTCTACAACAACATTTACTCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGACTACTCATACAGGGAAAGTAACTCCATATCATCCAGGAGCAACTCCATTAACATCACTGTAGTAAACTTGCAGCAGCCCAACATCTCCTTCACTGCCACTGGTGGATGGTTCCACTGGGGGCCTAACGGACCAGAAGTTACTACTGGCTACGGATTCTCCATCATTTGCTCCGTTAAAGCTCAGTATCCAGGAGGTTCCTTTCACTTGGTGATCAGTGGATCCAACATCACCAGGACTCAGTCAGCTGTTAATAACTCAGCTGTCTTCCTTTTTCCTAAGGCAGATTGTGTCCATCAGGGAAACTACAACTGTATTTATGAAGTTAACGTGTCTTCACGTACCTTTACTTCCACCAAACTCCTGGCCATCACTGTGAAagACTTGCAGGCTCCCACATTGACTCGGATCTCCCCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGTTCAGATGTACCACACCCAGCCCAACGTGCATCTCTGTAGACTTCAGTTTGTATAAAGATGGGACATCCGTAAAAAAGCAAACTGCAGAGTCTACAGCAACATTTAATTTATCTGGAGATTCTTCACATCAGGGTCAGTACACCTGCGACTACTCATACAGGGGAAGTGACTCTACATCGTCCAGGAGCAACTCCATTACCATCACTGTGGTCCATAATGGGACCAGGCTGGTGAATGGTCCACGTAACTGTTGTGGTCGAGTGGAGATCCAGCACAAAGcccagtggggaacagtgtgtgatgatgattgGGACTTAAAGGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAAAGCCGTCAGCGCTCCTCAAAGTGCCCACTTTGGGGAGGGAAGTGAACCAACCTGGCTGGATAATGTTCAGTGTACTGGAACTGAGAGCTACATAGATCAGTGCTCACACAATGGATTTGGAATAGAGAACTGTGGACATGGTGAAGATGCTGGGGTTGTGTGCTCAAACCTGCAGGCTCCCACATTGACTCGGATCTCCCCAAACTCTGTGCTCTCACCTGGAGAAGTCCTTCAGTTCACATGTACCACACCCAGCCCAACATGCATCTCTGTAGACTTCAGTTTGTATAAAACTGGGACATCAATAATGACACAAACTGCAGAGTCTACAACAACATTTACTCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGACTACTCATACAGGGAAAGTAACTCCACATCATCCAGGAGCAACTCCATTACCATCACTGTAGTAAACTTACAGCAGCCCAGCATCTCCTTCACTGCCACTGGTGGATGGTTCCACTGGGGGCCTAACGGACCAGAAGTTACTATTGGCTACGGATTCTCCGTCATTTGCTCCGTTAAAGCTCAGTATCCAGGAGGTTCATTTCACTTGGTGATCAGTGGATCCAACATCACCAGGACTCAGTCAGCTGTTAATCACTCAGCTGTCTTCCTTTTTCCTAAGGCAGATTGTGTCCATCAGGGAAACTACACCTTTACTTATGAAGTTAACGTGTCTTCACGTACCTTTACTTCCACCAAACTCCTGGCCATCACTGTGAAagaCCTGCAGGCTCCCACATTGACTCGGATCTCCCCAAACTCTGTGCTCTCACCTGGAGAAGTCCTTCAGTTCACATGTACCACACACAGCCCAACGTGCATCTCTGTAGACTTCAGTTTGTATAAAGATGGGACATCCGTAAAAAAGCAAACTGCAGAGTCTACAGCAACATTTAATTTATCTGGAGATTCCTCACATCAGGGTCAGTACACCTGCGACTACTCATACAGGGGAAGTGACTCTACATCGTCCAGGAGCAACTCCATTACCATCACTGTGGTCCATAATGGGACCAGGCTGGTGAATGGTCCACGTAACTGTTGTGGTCGAGTGGAGATCCAGCACAAAGcccagtggggaacagtgtgtgatgatgattgGGACTTAAAGGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAAAGCCGTCAGCGCTCCTCAAAGTGCCCACTTTGGGGAGGGAAGTGAACCAACCTGGCTGGATAATGTTCAGTGTACTGGAACTGAGAGCTACATAGATCAGTGCTCACACAATGGATTTGGAATAGAGAACTGTGGACAtggtgaagatgctggagtTGTGTGCTCAAACTTGCAGGCTCCCACATTGACTCGGATCTCCCCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGTTCACATGTACCACACACAGCCCAACGTGCATCTCTGTAGACTTCAGTTTGTATAAAGATGGGACATCCGTAAAAAAGCAAACTGCAGAGTCTACAGCAACATTTAATTTATCTGGAGATTCTTCACATCAGGGTCAGTACACCTGCGACTACTCATACAGGGGAAGTGACTCTACATCGTCCAGGAGCAACTCCATTACCATCACTGTGGTCCATACTGAGATCAGACTGGTGAATGGTCCGAGTAACTGTTGTGGTCGAGTGGAGATCCAGCGTAAAGACCAGTGGGgagcagtgtgtgatgatgattgGGACTTAAAGGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAAAGCCGTCAGCGCTCCTCAAAGTGCCCACTTTGGGGAGGGAAGTGAACCAACCTGGCTGGATAATGTTCACTGTACTGGAACTGAGAGCTACATAGATCAGTGCTCACACAATGGATTTGGAATAGAGAACTGCGGACATGCTAAAGATGCTGGAGTTGTGTGCTCAAACTTGCAGTCTCCCACATTGACTCGGATCTCCCCAAACTCTGTGCTCTCACCTGGAGAAGTCCTACAGTTCAGATGTACCACACACAGCCCAACATGCATCTCTGTAGACTTCAGTTTGTATAAAGATGGAACATCAACAAAGAAGCAATCTGCAGAGTCTACAGCAACATTTAATTTATCTGTAAATGCCTCACATCAGGGCCAGTACACCTGTGACTACTCATACAGGAAAACTGACACTACATCATACAGGAGCAACACCATTAACATTACTGTGGTGAACCTGCAGCAGCCCATTATCTCCTTCACTGCCACTGGTGGATGGTTCCACTGGGGGTCTGATGGACCAGAATTGACCATTGGTTATGGCTTCTCCATCATCTGCTCCATTAAAGCTCAGTATCCAGGAGGTTCCTTTTACCTGGAGCTCAATGGATCCAACATCACCAGGACTCAGTCAGCTGTTAACCACTTAgctgtcttcttttttcctgaGGCACATTGTATCCATCAGGGAAAATACAGATGTATTTATGAAGTTAACGTGTCTTCACGCACCTTTACCTCCACTACCACTAAACCCCTGTTCATTACTGTAAAAGCATCTCTGACCCCATTCATTGTTGTTGGAGTGACAGCAGGACTGCTTTTCATGTTAGTGCCAGTCATCATTTGCTTTGCaaagacacagaaaaaaagaaaatatcagaTGGACAGGAAAGATACAGAGTTTGACTTGCATGCCAAAAACCCAAATGAGATTCCCCAAGGAGAGAACAATGCAGACGATGAACCTGTTTGTGAAAACGCAGAAACCTTTTTCCACCAGAAAGTAGACAATGAGTAAGAGGATGAAGAAATTTATGAAAACTGTCTACAGTAGCTTGGAGAACTAAGCTAATACACATTATCTGCATTCCACAAAGAATAACAGGGATAAATTGGATAATTTTTCATTGTTAagatgttctgtttttttttattataaatttttttattataaattttagtttttaattttctcattttatccagtcttttaaaatgtaactatattacaacttatttttttctcactgctTTATTGCTACTCGTTAATCTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242013 lncRNA upstream 11363 2902229 ~ 2902895 (+) False LOC113528221
TU242059 lncRNA upstream 142948 2770686 ~ 2771310 (+) True G204362
TU242026 lncRNA upstream 190449 2656576 ~ 2723809 (+) True G204333
TU242025 lncRNA upstream 190449 2656924 ~ 2723809 (+) False G204333
TU242020 lncRNA upstream 287109 2619027 ~ 2627149 (+) True G204330
TU242111 lncRNA downstream 51180 3034271 ~ 3036163 (+) True G204410
TU242118 lncRNA downstream 81814 3064905 ~ 3072726 (+) True G204417
XR_003402893.2 lncRNA downstream 209613 3192704 ~ 3200055 (+) True LOC113527909
TU242361 lncRNA downstream 232696 3215787 ~ 3218884 (+) True G204633
TU242421 lncRNA downstream 370207 3353298 ~ 3356906 (+) True G204678
XM_034309777.1 mRNA upstream 6215 2867768 ~ 2908043 (+) True LOC113528221
XM_026916953.2 mRNA upstream 58005 2855396 ~ 2856253 (+) True hspb9
XM_034310177.1 mRNA upstream 222544 2622170 ~ 2691714 (+) True LOC117598986
XM_034309964.1 mRNA upstream 656002 2239609 ~ 2258256 (+) False nbr1b
XM_026916895.2 mRNA downstream 20517 3003608 ~ 3012859 (+) True pyya
XM_026916120.2 mRNA downstream 31892 3014983 ~ 3031164 (+) True mpp2a
XM_026916304.2 mRNA downstream 105271 3088362 ~ 3146182 (+) True LOC113528048
XM_034309925.1 mRNA downstream 176842 3159933 ~ 3174285 (+) True kat7a
XM_034309926.1 mRNA downstream 176842 3159933 ~ 3174285 (+) False kat7a
XR_004579364.1 other upstream 758409 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1028780 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 1323183 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 1557931 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 1677646 1220512 ~ 1236612 (+) False paqr4a
TU242114 other downstream 20581 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 209621 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 983667 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 983667 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 983667 3966758 ~ 3986284 (+) False limd2

Expression Profile