RNA id: XM_034309776.1


Basic Information

Item Value
RNA id XM_034309776.1
length 1855
RNA type mRNA
GC content 0.55
exon number 12
gene id rarab
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2739238 ~ 2775089 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCAGCGTTGCGTTGCGCGCAGCTGCTCGCGCTCGTCAAGCCGCCGCGCtgtgagagaaaggaagaggcGGAAAGACGGAGCAGATAGCGGACACAGCGCGGACTCAGCGCGGACAGAGGAGCGTTCCCGTCAAGCGACATGAGCACGAGCGTGAACAAGCCCCGCGCGCACAAATCCCCGCGCCGTGGAGAAATCCCACCAACTTGTTGACCTGCGCGCGCTCGGGACGGGACTTTCTTCACGCGGATGAGGATTAAACACGATCCTGCATGCCGgatttttatctctctctctcacacacacacacacacacacacactcctgggcTCGAGTTAAACCCAGGAACGTTTTGAACCTCTGATTAAAGCCTTGCTGctttttgatatttatttcttatttaaagcGCGCGTGCTGCGTGGTTGCACCGATTGCGATTATTCCAAGGATGCATGTCGTTAGAACGACGCGACTGTTTCACTGAGTcgcgtgcgcgcgtgtgtgttcGTTCGTTCGTGCGTGCGTGCACATTctttcacacacttacacacgaCATCGTGAGCGAGTTTGCAAGCTgacccataaacacactcccgAGCGCGAGAGGTGGTCTCAGGAGCACGGTGTGTGTCCAGTCCCAGGCCCGTGTCAGGGCTTTAATCCCTCCGGAGCCGGGTTTGCGCTGAGGTGGGAGCAGAAAGCTCAGGGAGCTCCCTCGCGTTTGCGCCATGTATGAGAGCGTGGACGTGGTGGGTTTGACCCCGAACCCGTTCCTAAGTGTGGATTATTAccaccagcaccagcagcagcagaagcgCGGATGTCTGATCCAGGATAAAGGGATGCCGAGATCTTTCATCCCCTGGAGCTCCTCTCACTcaGTGGACACTCAGAGCTCCAGTTCCGAGGACATTGTCCCGAGTCCTCCGTCTCCTCCGCCTCCTCCTCGTGTGTATAAACCCTGCTTCGTCTGTCAGGACAAATCATCGGGATATCACTATGGAGTCAGCGCCTGTGAGGGCTGCAAGGGTTTTTTCCGCAGAAGCATTCAGAAGAACATGGTGTACACGTGCCACCGAGAGAAGAGCTGCATCATCAACAAGGTCACACGCAACCGCTGTCAGTACTGTCGTCTGCAGAAGTGCCTGGAAGTGGGCATGTCCaaagagtCGGTTCGGAACGACcggaacaagaagaagaaggaggagaagaagccGGAGTGTTCTGAGAGCTACGCTATGAGTCCTGATACGGAGCGGATGATCGAAGTGCAGGAGAGAAAAGCTCACCAGGACACGCTTCCATCGCTGTGTCAGCTGGGCAAATACACCACGGTGACTGATCACAGAGTCTCTCTGGACGTGGATCTGTGGGATAAATTCAGCGAACTCTCCACCAAGTGCATCATAAAAACAGTGGAGTTCGCCAAACAGCTGCCCGGCTTTACCACGCTGACCATCGCAGATCAGATCACACTGCTCAAAGCAGCCTGCCTCGACATcctgATTTTATGGATCTGCACACGCTACACTCATCAGGACACCATGACGTTCTCGGACGGACTGACGCTGAACCGGACGCAGATGCATAACGGCTTCGGGCCTCTCACTGACCTCGTGTTAAGCCTTGCTAATCAGCTGCTGCCGCTGGAGATGGACGACGCGGAGACGGGCCTGCTCAGCGCCATCTGCCTGCTGTGTGGAGATCGTCAGGATCTGGAGGAGTCAGACAAGGTCGATATCCTGCAGGAGCCTCTGCTCCTCGCGTTGAAGATCTGGAGAAAGAGGAGGCCTCATAAACCACACATGTTCCCCAAAATGCTGATGAAGATCACAGACCTCAGGAGCATCAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241989 lncRNA downstream 197713 2541126 ~ 2541525 (-) True G204317
XR_004579377.1 lncRNA downstream 237043 2496612 ~ 2502195 (-) True LOC117598837
TU241970 lncRNA downstream 305158 2433228 ~ 2434080 (-) False LOC113528062
TU241959 lncRNA downstream 323711 2414467 ~ 2415527 (-) True LOC117598835
XR_004579375.1 lncRNA downstream 323928 2414319 ~ 2415310 (-) False LOC117598835
TU242232 lncRNA upstream 190794 2965883 ~ 2970869 (-) True G204518
TU242241 lncRNA upstream 253726 3028815 ~ 3033228 (-) True G204524
TU242256 lncRNA upstream 259157 3034246 ~ 3039652 (-) True si:dkey-283b1.6
TU242266 lncRNA upstream 298888 3073977 ~ 3075688 (-) False si:dkey-283b1.7
TU242401 lncRNA upstream 396173 3171262 ~ 3174277 (-) True G204664
XM_034309996.1 mRNA downstream 201127 2433149 ~ 2538111 (-) True LOC113528062
XM_034310001.1 mRNA downstream 201127 2433150 ~ 2538111 (-) False LOC113528062
XM_034310000.1 mRNA downstream 201127 2433150 ~ 2538111 (-) False LOC113528062
XM_034309998.1 mRNA downstream 201127 2433151 ~ 2538111 (-) False LOC113528062
XM_034309999.1 mRNA downstream 201127 2433151 ~ 2538111 (-) False LOC113528062
XM_034309774.1 mRNA upstream 14087 2789176 ~ 2833854 (-) True LOC117598766
XM_034310163.1 mRNA upstream 260602 3035691 ~ 3039279 (-) False si:dkey-283b1.6
XM_034310164.1 mRNA upstream 260602 3035691 ~ 3038667 (-) False si:dkey-283b1.6
XM_026917041.2 mRNA upstream 264892 3039981 ~ 3054967 (-) False abi3a
XM_026917040.2 mRNA upstream 264892 3039981 ~ 3054920 (-) True abi3a
XR_004579338.1 other downstream 138886 2599709 ~ 2600352 (-) True LOC117598767
XR_004579451.1 other downstream 731450 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other downstream 731451 2003534 ~ 2007787 (-) False LOC113527889
XR_003402974.1 other downstream 1239633 1499515 ~ 1499605 (-) True LOC113528659
XR_003402975.1 other downstream 1239888 1499261 ~ 1499350 (-) True LOC113528660
XR_003402970.1 other upstream 380207 3155296 ~ 3155430 (-) True LOC113528655
XR_003402972.1 other upstream 381528 3156617 ~ 3156709 (-) True LOC113528657
XR_004579380.1 other upstream 607742 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other upstream 624656 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other upstream 624656 3399745 ~ 3413767 (-) False nde1

Expression Profile