Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034309796.1 |
| length | 1242 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 2 |
| gene id | LOC117595691 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 16997366 ~ 16998694 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU251602 | lncRNA | upstream | 69384 | 16869758 ~ 16927982 (+) | True | G212446 |
| TU251605 | lncRNA | upstream | 69997 | 16923805 ~ 16927369 (+) | True | G212449 |
| TU251601 | lncRNA | upstream | 82793 | 16842948 ~ 16914573 (+) | True | G212445 |
| TU251594 | lncRNA | upstream | 186616 | 16810311 ~ 16810750 (+) | True | G212441 |
| TU251563 | lncRNA | upstream | 227238 | 16769928 ~ 16770128 (+) | True | G212412 |
| TU251703 | lncRNA | downstream | 53684 | 17052378 ~ 17055807 (+) | True | G212541 |
| TU251750 | lncRNA | downstream | 111542 | 17110236 ~ 17113156 (+) | False | srl |
| TU251769 | lncRNA | downstream | 181100 | 17179794 ~ 17180253 (+) | True | G212571 |
| XR_004579348.1 | lncRNA | downstream | 277960 | 17276654 ~ 17285842 (+) | True | LOC117598773 |
| TU251783 | lncRNA | downstream | 285589 | 17284283 ~ 17284486 (+) | True | G212582 |
| XM_034309795.1 | mRNA | upstream | 25599 | 16832403 ~ 16971767 (+) | False | LOC113528175 |
| XM_026917291.2 | mRNA | upstream | 25599 | 16967041 ~ 16971767 (+) | False | LOC113528175 |
| XM_034309794.1 | mRNA | upstream | 33417 | 16832403 ~ 16963949 (+) | True | LOC113528175 |
| XM_034309870.1 | mRNA | upstream | 178098 | 16808875 ~ 16819268 (+) | False | hmox2b |
| XM_026917074.2 | mRNA | downstream | 68543 | 17067237 ~ 17085755 (+) | True | tfap4 |
| XM_026917225.2 | mRNA | downstream | 88590 | 17087284 ~ 17112770 (+) | True | srl |
| XM_026917226.2 | mRNA | downstream | 88591 | 17087285 ~ 17112770 (+) | False | srl |
| XM_026916268.2 | mRNA | downstream | 321048 | 17319742 ~ 17342075 (+) | True | trap1 |
| XM_026916309.2 | mRNA | downstream | 699979 | 17698673 ~ 17733006 (+) | False | cenpx |
| TU251142 | other | upstream | 851982 | 16140330 ~ 16145384 (+) | False | LOC113527983 |
| TU251011 | other | upstream | 1028607 | 15918217 ~ 15968759 (+) | True | G211913 |
| trnar-ucu_8 | other | upstream | 1184035 | 15813242 ~ 15813331 (+) | True | trnar-ucu_8 |
| XR_004579399.1 | other | upstream | 3504516 | 13475828 ~ 13492850 (+) | False | zgc:158403 |
| XR_003402925.2 | other | upstream | 4808777 | 12158706 ~ 12188589 (+) | False | arhgap17b |
| TU251743 | other | downstream | 88597 | 17087291 ~ 17109275 (+) | False | srl |
| XR_004579361.1 | other | downstream | 1185325 | 18184019 ~ 18341937 (+) | True | LOC113528485 |
| TU252614 | other | downstream | 1916032 | 18914726 ~ 18919872 (+) | True | smim22 |
| TU252615 | other | downstream | 1916032 | 18914726 ~ 18919872 (+) | False | smim22 |
| TU252829 | other | downstream | 2145380 | 19144074 ~ 19145240 (+) | True | G213491 |
