RNA id: XM_034309797.1


Basic Information

Item Value
RNA id XM_034309797.1
length 2410
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC113527979
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4359299 ~ 4394529 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctttttataCATCTTTTTTATTTGCTCCTACACCGACACATCTCTggtcctctcctctcctcagtTCTCCTCTTCTCAGCTGACTTTGTTCCTTCCCTCCCTCATGTCCTCCTCTCCTCCGCTCTCTGGCTGTGGGGATGTGACTGAGTCTGAGCGGAGAGgagggacagagggagggagggacagaTGGAGGAAAAGAGGGAGGGGAGGGTCAGTATAAAACTCTCGATCTGTGATTCTGCCTCTGCAAACAGCCCAGGTTTCTCATCCCCTCCTCTGCATCTGCCGctcttctctcactcacactcgcTCACTTTGTCCTCTCGCTCTCCACCCTGCGTCACAGCCTGCAACTCTCTCGACTAAACCCTGGGATTGACTTTTTTTAGGGGAGGAGTTGTGTGTGAGGGGATGTAGGAGGTGTCTGAGACTTCAGTCCAACGCTGGCAGCTAAGCCATCCACGAACAGACGCAGGAAAGTGACggcacgtgtgtgtatgtgggtcttcttctccttcacacacacttcaaggCACTTTTCAGGATACTAGCTGTGTCCTGCTGTCCTTTCagtccttcacacacacacacacacacacacacacacacacacacttacacacgcTCCTCTTGGCTTTAGGCTCTCTACATCAGGCACCATTTCGGCCCCGGCCAGAGCGACCCTGGCCACCCAGCCGCTCCCGCGCCTCGGTCTGGGCAGGAAGAGCCTGGCAGCGGCGGCTGTAGGTGTTATGCTGCTCCTGGTGCTTGTGGTGCTCATCCCGGTGCTGGTGAGCTCTGTAAGCACCGACGCCGGCCAGTATGAGATGCTTGGCGCCTGCCACATGGTGTGTGACCCTTACCTGAGCAGCAAAAGTGCTGTGACAGGTCCAGCGGGTGCAGGCTCTGAGGCACCGCCGCCACCCTCCACGCTCGTCCAGGGGCCACAGGGGAAGCCGGGACGGCCGGGCAAACCCGGACCTCCGGGGCCACCTGGGGAGCCAGGCCCCCCGGGTCCAATGGGGCCCCCGGGGGACCGAGGGGAAAGAGGGGACCGCGGCACAAATGGCATTAATGGAGCTATCAGCACGGTGACATACAGCACACAGCCACGCGTTGCTTTCTATGCCGGACTCAAGAACCCACACGAGGGCTATGAGATCCTCAAATTCGATGATGTCGTCACCAACCTGGGCAACAACTATGACGGTGCATCAGGAAAGTTCATCTGCAGCGTGCCTGGCACCTACTTCTTCATCTACCACGTGCTGATGCGTGGAGGCGACGGCACAAGCATGTGGGCTGACCTGTGCAAGAACGGACAGGTGAGAGCAAGTGCCATCGCTCAGGACGCTGACCAGAACTACGACTACGCCTCCAACAGCGTCATCCTGCATCTGGACGCCGGAGACGAGGTCTACATCAAACTGGACGGAGGCAAAGCCCACGGcggcaacaacaacaaatacagcACTTTCTCTGGTTTCATCCTCTACGCTGACTGAACTGCAGAGCTcgaggagaagaggaagaagacgAGACGGAgaaagaagaagcctttatcaTCCAAGCGCTTTGTTTTCACTTCACAGGATCATCCTGCCGCTtcaaccatctttttttttttttttttttgctttgtttgatTGCGAACTCTAGTAAGAGACTGTCAGTGGACAGAGGGTGTCATTTCTGCTCTATGAATCAACTTAATGACAAAAAAGTGAGGAAAAATGAAAGCGGTGAAAAAAGagaccttttctttcttcctatgAGACTCCTGCAGGACTTTCGAGTGGCAGAGATCTCATAGTCGCGTACGTCTCCCCATCACATCTCATCTTCCGTCCACAGATATTTATCTATGAGATACGAGAATGATCCAAGATGTCTGTCCCtcatggagaaagagaaaattaaatattttttgaaggCTTGCTTTATTGACTAAGGGATCGTTTCAGATTGAGTTTAGCCTAGTTAAAATCCTATTTCAGATTATTGAAAATGCTTGTGCATATTGAAAATTTGTGCCATCCTTAGCGCTTTTTGTTCTTTACCTCCCGTTCCTGAATAACTGAAGATTGGCGGTTGTTGTTTTTCAGCGTGATGTGCTGTGTCTGTAGCAGATGTGACTCGTGGCAGAACGTTGTCCATGAAGGACGTTTCGGAAAACACAAAGGACGCTTTTTCTAAATGCTGTTAATccttattcctttattttcatccATCAGTTAGCCGAGTACTCCTCTCATCCAACACTCCAGGCTCAAATGTTTCAAGTATCATTGTCCCTTTTAAATACCCAGCATGTTCATCTAGTCCAAAAACAACATAGTTTAaaccaggggttctcaaacttcttactgtttaaaaaaaaaaaaagaaagaaataatcaTGGTCTCCAa

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23284 C1QL; C1q-related factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243088 lncRNA downstream 2737 4356316 ~ 4356562 (-) True G205246
TU243086 lncRNA downstream 4915 4353485 ~ 4354384 (-) True G205244
TU243064 lncRNA downstream 135166 4223807 ~ 4224133 (-) True G205226
TU243055 lncRNA downstream 148701 4210435 ~ 4210598 (-) True G205217
TU243049 lncRNA downstream 153000 4206100 ~ 4206299 (-) True G205211
TU243111 lncRNA upstream 2544 4397073 ~ 4397301 (-) True G205269
TU243135 lncRNA upstream 110669 4505198 ~ 4507712 (-) True G205291
TU243137 lncRNA upstream 120407 4514936 ~ 4515138 (-) True G205293
TU243342 lncRNA upstream 155032 4549561 ~ 4551868 (-) True G205481
TU243345 lncRNA upstream 158768 4553297 ~ 4560422 (-) True G205484
XM_026916492.2 mRNA downstream 125336 4227165 ~ 4233963 (-) True ccdc43
XM_026916491.2 mRNA downstream 145566 4211229 ~ 4213733 (-) True fzd2
XM_034310221.1 mRNA downstream 166708 4152059 ~ 4192591 (-) False mylk5
XM_026916535.2 mRNA upstream 104369 4498898 ~ 4514637 (-) True ramp2
XM_026916962.2 mRNA upstream 168849 4563378 ~ 4590665 (-) True cntnap1
XM_026917275.2 mRNA upstream 277226 4671755 ~ 4690497 (-) True tubg1
XM_034309940.1 mRNA upstream 327888 4722417 ~ 4734902 (-) True mlx
XM_034309939.1 mRNA upstream 327888 4722417 ~ 4734885 (-) False mlx
XR_004579349.1 other downstream 241656 4092913 ~ 4117643 (-) False dcaf7
TU243007 other downstream 314724 4040481 ~ 4044575 (-) True G205173
XR_004579380.1 other downstream 945532 3382831 ~ 3413767 (-) False nde1
XR_004579368.1 other upstream 327888 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 333565 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 694807 5089336 ~ 5091922 (-) False G205633
TU244177 other upstream 1360238 5754767 ~ 5756733 (-) True G206236
TU244224 other upstream 1446608 5841137 ~ 5841477 (-) True G206282

Expression Profile