RNA id: XM_034309802.1


Basic Information

Item Value
RNA id XM_034309802.1
length 2690
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC113528397
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15582604 ~ 15595204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTAAATTCGCAACAGTGACTCTTCCAGGCAACAGAGAGAGTCAGTCTCCCGCTAAAGCTCTCCAGAAGCAGACCGGACTGTGGTCTTCCTAGGAGACTTCAGGGAGACTGTGATAGCACAGGCTCTTCAGGATATATGCCCAAGTTACGCCCCGTTTTCAAAAAGCCTCAAGTCTTAAAAGAGCAAAGCACCAGCAAAACTGTAACAGCTGCCACTGTGCCAGAAGTAATGGCTGCCAATGTGCCAGAAGCAGAGAGGGAGCTGATAAACGAGAGCCAGCAGCCTAATGCAGAGATGGTCATCCAACAGCTGTGTAGTCAGGTCACTGAGCAAATGCTGAGTGAAGCCAAATCAGAGCTGCAGagGGCAAGAGAAGAGGTggaagagaaaatgaaggagTTAAACAAACTTGAGAAGGAGAAGAGTGACCTCCAGAATCATGCAGATCATctacagcagcagctgaaggaAGCCAGATTGGAGCTGCAGAAAGCGAGTGAGGTGTGTCCAGGAAAAGACGAGTGCGTGGAAGTCAACATGGAATCAAGAGTATGTGAGAGGTTCTCTCAACTGGCTGAGAAAGTGGAAGCGGTGAGAAGAAACAGGGAAAGTAATAAGTGCACTACTGCAGAGGAATGTCTGTCTGAATCCATACCAGTGGTGGTCAACAACAGAATTGTCATGCCTCTTACATCAGAAACACTCGAGATGGCATGGGACGACTACAGACAGGCCTTAAAGCAGCTTAAAGAGTGTCAAAGTAAGGGGGAGTTGGAGGACCTGGTGAACAGCAGGAATCGGGCTCGCAGTGTTCTCCTAACTGCCATAGATGACTTCCTTCTGGTGGTGGGCAATCTGCCAATTACTGATCGCTTGAACACcctaaagGATGTCAGCTCATCACTGATGGCTGTGTTTGGTTCAGTCTCAACAGATGATGTTCAGGATCAGTTTTTAGAACAATTCTGTGAGTGGAGAACTCAAAAGCATCATAACTTCAGAAATGTGCGTCAGGCGACAGATAAGGCCCTCTGTGCTCTCAGTGACTGGGCAGCCAACACCAGCAAGTTTTTCTGCTTGACAGAGAAGACTGCTGTGACCCTGGAAGCTGTTGGTGCAGGAGTGGATGAGCTTCTGAAGCAGGCGGAGTCTGATGTGTGTGAGGAGCTGAACAGTAAATTCTTTGATCAAAATCCCGAGGACATGAAAATAATGTCTACTGCATGCCGTATAGTGATGCAGCGTATCCAAAAAGAGGAGCATCTACTTCGTGGCCTCAGAGAGATGTATGAAGATAACAAAAAGTTTAAGGAGGACATGGTGCAATGGCAGAACAGCTCACCTAAAGCAGATGAGCTCTTACACATAAAGAAACGCATCAAGAGCCTGCGTTCACAGTTGCGTTGGAAACTGGTAGAGGTGGGCTGCCTGGAAGAGGCTGATGACCTGGATCTGCCTGAGATTCTTAGGAAAAAGGAAGAGATTGCTGAAACAAGGAATGCTCTCTTTCAGCAAATTAGGCAAGAGAAAGAGCAATATGTAAAACTCTGTGAGCTGGTTAAAGGAAACTTTCCTGagcttctgctgctgtatcCTGAGGCAGACATCAGCAGTTACCTGCTCTCTGAGGGGCTGTTAATGAAGAGTTTGGATCGAGACATATTTGATGCTGAGCCAATGAGAGAGCTGAGTGGGCGCAGACCACTAGTGTGTACCGAGTTCCAGTGCCAAAAGGTGGTGCTCAAGGGCTACTCTGTGGATGAAGAGTCAGAAGTGAGGATGATTAAGCAGGCCGCGCAATATCACAAAGCTCAGAATCAGCATCCCTCCACTGCCATGCCTCTGCTGGGCCTGTTCTTCGGCAAGTCGGATCCTCTGGCCTACATCATGGTGCCTTACTACTCGAATGGGAGTCTGAAAGCTTTGCAGAAACTCAGCCCACTGACACCTTCTGAGATTAGGAGGGGGATGAGAGGAGTACTTCTTGGGCTACAGAGTCTGCATGAATCCTGCATTATACATGCCTCTCTGAATGCCAGCAACGTGTTTGTTCTCAACCGAGAGCAAGGCATCGTAGGGGATTTTGATTTCACAAAGACACCAGAGCAGAGGGCTGTGGACTGTGGCATGGTGGCTGGCTCTATCAGTCTGGTGGCTCCAGAGCTAAGACAGAGTGAGCCACCCTCTCCAGCCACGGACATGTACGCTTTCGGAGGCCTCATGCTCTGGctTCATGCTCCTGACTGCACTGGAGATGTGGACAATGAGCATGGCCCAGGGTTGTCTGGATTACAGCTGGGTGTCAAAGTCCAAACTCTCCTCTCAAAGCTGCTGGTCTGTTCTGGAAGACTGTCAGCTGCTGAAGCACTGTGTGATGATTACTTCCTCTCacttgaaaactgaaaaaaagaagaagaagaagaagaatataaaattgtgttcatttttgttGCACTGATTGTTctagttttaattatttgttttgttttgttaaaaaagagaaataatcaagAAGGATACTTTTGAAgttttgtttaaacaaataaaatatacctAATAATGTTGATGATGTGCTGAACAACTtacaacatggcaccttttgtttgaacccaccctttttttcaagtgatcagaaatatgtAACTGAcatgtgtttcttgttgccacccaggtgtgccctgttacact

Function

GO: NA

KEGG:

id description
K16316 STK31, TDRD8; serine/threonine-protein kinase 31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250855 lncRNA downstream 34542 15547827 ~ 15548062 (-) True G211774
TU250854 lncRNA downstream 34845 15547555 ~ 15547759 (-) True G211773
TU250824 lncRNA downstream 72321 15509697 ~ 15510283 (-) True G211751
TU250806 lncRNA downstream 109261 15471948 ~ 15473343 (-) True G211737
TU250893 lncRNA upstream 28503 15623707 ~ 15623990 (-) False G211800
TU250894 lncRNA upstream 28503 15623707 ~ 15624357 (-) True G211800
TU250892 lncRNA upstream 28900 15624104 ~ 15624357 (-) False G211800
TU250897 lncRNA upstream 31372 15626576 ~ 15627023 (-) True G211803
TU250899 lncRNA upstream 33529 15628733 ~ 15629969 (-) True G211805
XM_026917092.2 mRNA downstream 1539 15578454 ~ 15581065 (-) True LOC113528505
XM_034309829.1 mRNA downstream 379420 15053544 ~ 15203184 (-) True si:ch73-374l24.1
XM_034309830.1 mRNA downstream 379812 15053544 ~ 15202792 (-) False si:ch73-374l24.1
XM_026916124.2 mRNA downstream 530961 15038370 ~ 15051643 (-) True cacng5b
XM_026916674.2 mRNA downstream 596492 14979625 ~ 14986112 (-) False rac1b
XM_026916317.2 mRNA upstream 12240 15607444 ~ 15617384 (-) True LOC113528053
XM_034310048.1 mRNA upstream 12241 15607445 ~ 15616939 (-) False LOC113528053
XM_034310215.1 mRNA upstream 555871 16151075 ~ 16203991 (-) False LOC113528178
XM_034310214.1 mRNA upstream 555871 16151075 ~ 16203991 (-) True LOC113528178
XM_034310216.1 mRNA upstream 555871 16151075 ~ 16203639 (-) False LOC113528178
XR_003402969.1 other downstream 110692 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 892472 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 1061629 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 1091829 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 1552963 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 1697647 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 1697647 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 1697647 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 1697647 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 1697647 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile