RNA id: XM_034309830.1


Basic Information

Item Value
RNA id XM_034309830.1
length 5667
RNA type mRNA
GC content 0.42
exon number 17
gene id si:ch73-374l24.1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15053544 ~ 15203184 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCTGATCTTATCCACATGCACGACTCTTCCGCTGCGCTCGTGAACCGGTTCGCCCGCAAAGGCGCGCTGCGCCAGAAGAACGTGCACGAAGTAAAGAACCACAAGTTCATCGCGCGCTTCTTCAAGCAGCCCACATTTTGCAGCCACTGCACCGACTTCATCTGGGGATTTGGCAAGCAGGGATTCCAGTGCCAAGtgtgctgTTTTGTGGtgcacaaaaggtgccatgaGTTTGTCTCGTTCTCCTGTCCTGGGGCTGACAAGGGGCCAGACACAGATGATCCAAGAAGCAAGCACAAATTCAAGATTCATACCTACGGCAGCCCCACCTTCTGCGATCACTGTGGCTCGCTGCTGTATGGACTCATCCACCAGGGGATGAAATGTGACAcaTGTGACATGAATGTACATAAGCAGTGTGTGATGAATGTGCCAAGCCTGTGCGGAACAGACCACACCGAGCGCAGAGGACGCCTCTTCCTCAAGATTGAGGTCAGCGGAGACAAACTTCACGTGACAGTTGGTGAGGCCAGAAACCTGATTCCCATGGACCCTAATGGCCTCTCGGACCCATACGTGAAGCTGAAGCTGATCCCTGACCCCAAGAATGAGACCAAACAGAAGACACGGACCATCCGCTCTTCTCTCAACCCCACATGGAACGAGTCCTTCACCTTtaagcTAAAGGCCACAGATAAAGACCGGCGGCTGTCAGTAGAGGTTTGGGACTGGGACAGAACCACCAGGAATGATTTCATGGGATCCATGTCGTTTGGAGTGTCAGAACTATTCAAGGCACCGGTGTGTGGCTGGTACAAGATGCTGAACCAGGAGGAAGGTGAATACTACAATGTGCCGATTCCAGATGTGGATGACATTAACTTGGAACTCAGGCAGAAGTTTGAGAAAGCAAAGTTGGGCCCAGGCAAGAAAGTGATCACACCGTCAGACCACCGGCGCTTCAGTTTTCCCTCCAGCAACATGGACAGGGTTCGACTTAACGATTTCCACTTCCTGGCACTTCTAGGAAAGGGCAGCTTTGGCAAGGTAATGCTGGCGGAGATGAAGTCCACAGAGGAGCTGTATGCAATCAAGATCCTGAAGAAGGACGTTGTGATCCAGGACGATGATGTGGAGTGCACTATGGTTGAGAAGAGGGTGCTGGCACTGAGGGACAAGCCACCCTTCCTCACCCAGCTCCACTCCTGCTTCCAGACAGTGGATCGGCTCTACTTTGTGATGGAGTACATTAACGGAGGAGATCTGATGTACCACATCCAGCAAGTGGGCAAGTTTAAGGAGCCTCAGGCTGTATTCTACGCTGCTGAGATTGCCTTGGGCCTGTTTTTCCTGCATAGGAAGGGAATCATCTACAGAGACCTGAAGTTGGATAACGTGATGTTGGACTCAGAGGGCCACATTAAAATAGCAGATTTCGGCATGTGCAAGGAGAACATGTATGAAAGCATGACAACACGCACCTTCTGCGGTACTCCAGATTACATCGCCCCAGAGATCATTGCATATCAGCCTTATGGAAGATCAGTGGACTGGTGGGCTTATGGCGTACTCTTGTATGAGATGCTGGCTGGGCagCCCCCGTTTGAcggtgaggatgaggatgagttgTTCCAGTCTATCATGGAGCACAATGTCTCCTATCCCAAGTCCATGTCTAAAGAAGCTGTGTCCATCTGTAAAGGACTGATGACAAAGCACCCATCGAAGCGACTTGGCTGTGGTCcagaaggggagagagacatTAAGGAGCAGGCCTTCTTCCGCAGAATTGACTGGGAACGACTAGCCAACCGAGAGATTCAGCCACCATTCAAACCCAAagttTGTGGCAAAGGGGCGGAGAACTTCGACAAGTTCTTCACACGCACccagcccatgctgaccccacCAGACCAGCTGGTCATCGCCAACATCGACCAGAGCGAGTTCGCCGGCTTCTCCTACATCAACCCACAGTTCATCCACCCATCAGTGCACGGAAGCGTCGTATGAGACAGAACCGAAGTGTAACTCCCAACCACAACGATGATGACTATAAACTCACAAATCTGTCTGTATACTGTTAATGACCCTTTAGCAGAGCAATTTTGAAAGTGGAGGTTTAAATGGGATGATAAATGATTGATAAACAGGATGACTAGTTTCACATGGTGCAATACATTAAATAGGTGACAGTGGTTCTGAAATCCTTAACGGTTCGAAGGCTTTAGAGCAATGATACCATCACAGCCTGTTCACGTATACATCGATCTGGTCACGTATATGTCAATTCAATGTATATTAATGATGCAATACAATGTGGAATTAACACAACATGGTCAAAATTGATCTGTTGACCTGAAAGTATATTTCAGAGAAGTAACAGAGAATTGATTGGTGGTTAGTTGATTAAATTGGAGCAGTGGGCAATATCAGAAGATGTGCAGAACCagtgaaatcattttaatataaaagtataatagACTGGTTTTCCTTAGTTTTTACCCCTGAATCCAGAGCCTTGCCATTCTGTATGTATGAAGCATGTTGACATGCTTGACTTGCTTTAATTTTGTCTTAGCGTGGTCAGTTTCCTCTTATCTACTGCCATTTCTAAACTTCCTAAACTAAAtagacatatatacatatatatatttgtatatccaaaaaaaaaaaaagattatctATTGTTATAGGCGTGCCAAAATACAGGTGCATCAAAAGATTTTATAAGTCTCACTATGACCATATATTAATTTCGTACTAACGCTCTTATGGATGTAACTCGTTATGTTATTTTCATCCTGACTTGGACTCTGTTGGAGTAAGTTGTTCTGTGCTCCtgtttgcagcatgaaagtccTCGAATGTACGTTTGATTCCTGATGACATTTTGTTTGAGCTGTTATTTCCATCAGCCAGCATGCTGTTAACTGTACATTCAAGACAGACAGCAAACGGTAaacagtgtgtgcatggttgCTCTTGTATACACTGCAGAGCTGCATGATATGgagctgtttctttctttcctactGATTTCTGATGCAGAGTGACCACCCTGATTCTTCCCAACAGATGTTGAGacaattaaaattaattgaGACTATGTACAACTCAGAAAATGACAgggaacacacagacacagtgcgCATGCATAGTAGCCTACCAGCTAACGCATAGACTAAGGTCCAGTGACGAAAATTGTTGCCTCCACATGATTGCGACCAGTTTGCTGTTCTGAAATGCACAATGCGGTTCTATGATGCatgtttatttctctgtttgtAAAGTCCATTAGAGAACCCAATAGACAGGCAGCAATCTCCAGTATCAAACCTGCTTGCGTTATATCGTGAGACGAAGTGTTTATGTACTTTCCCGTGATGGATTCTGTGTTCTACTATATGCGCTGAAgttcttctcctcttctttcaAATGCGTTTTTACTTTCTTCCTGCGTTCTTTGCTCCGTGGATACTTTCATATGAAGAAGTATGTTTACTGTTACATTAAAGCAACACTATATCAACGTTTTTGTAAATACAGAGGCTGTTTCAAAAGAGAATTAACGTTAACTGTAGATTTTATACCAAGAACTGAATGTGCTTTTACAACATTAGTTGGTTTCGACATATCTGTATGCTTTAGATAATGTGATTAAAGGAGACTAGTTTGGCAGAACCTTTGATAGCTTTGGTATTGGCAAACCTTGTTATATATGTATTTCTTGTATTTATCTGCACTTTTTGTCAATGTTTATGAGACAATATAAGCGGAGAAGCAGTATCTAGTTATGAGCGCAGTGTTTATACCAGCGCTCCTGCACATTGTATTTCTTTTCGTTGTGTGCATGTGAGGGTATGGGGAAATCAGAGCATGTAACTCAAGTGTTGAATCAACTACAAACCATCTCTAGGAATGGCCGTATCATGCCAAGTACAAAACCTGTGCCCTTTACTTTCATGTTGTCGTTTTTGTTTCCATCTTCCTCTTTCATCTGGCCACTGAATGAAGAACTAGTGCAGACATTAGTCAAACATTTATATTGATCAAGAACATTTACATTGATTCCTTTATTGTAACAAACTGACAGCAGAATACGTTGGCTTGCATAAGTGTTCACCCCcatgaacttttccacattttgcaaTGTAAAAACCTGGACCTGAAATAGACTAACTTAAATagtccataatattgaagtcGTGGAAAGTCTATATAGTttagaaaattatttacaaagcaGAAATGTTAAAGTAGTAATTGCAGACATATTCACCCCCACTTGGTGTTCAGtggtgcaaccagttgccatcagaaatCACAATTCGTTGAATAGGTCTTTAAATCAAGTCCATATGTGTGCAGTTATTGTGTCACGTGTTTTCAATATAAATACgcctgttcctggaaggccccaGAGCCTGTTATAGAACATGTAagcaaacagcatcatgaagaccaagcaGCTATTAAACCAAGTCTGGGACACAGTTCTGAAAACATATCAATCACGGTTTGGTTctaaaaaaatattccaaactttgaacatcccacagagcaccattaaattcattttattaaaaatggaaagaatatgacACGGCTGCGACTCGTGCACGAGTGCTTAGAGGCATTAGGCAGAGAATGTGTAAAAGTTTAAGGGGATAACGTATAGCTGAGTTGTTAAGACTTAAAACTCTTGCTTGAGGGTCCAGTAGTGACTTTCTTTGCTTAAGTGGTCTGAAATTCCAGTCTTTGTCCATTTGCTCTGCATTCTTTTGTGCCAAAAAACCTGTATATCTGTATGGATATAGAAAAGGTATTCAAATCAACTTTGAGTATGACCCATCAGGAATCCATTTCCCCCAACCCAATACCTCAGGATGTTCCCATACACATGCACTATTAATGTGCCAATGATCTTAGTGGATTATTGTCTATTTTGATACTTTAGCAGTGGATTTGTCCacattgtttattaaattagGACAGAAATCACTGGTTTGGGTCTCTTGCCATTCAACAGTAGTGTTGTGTTCACTGCATAGCAATGGATATATTAACCCAGGCcatctctttcatttttacagCAATACAGCTCTaccctttattttaaaatacccaATACATCTTTAATAATACgttatgtattattaattatcttgattaaattattagaatatataaacatttgtaGAAAGGTATGGAAGTAGGTGCTCAAAACCAGGCAGGTGGGgttttaaataagcaaataaatttgTGTTGGAAAAATGAGTTTTTAGCATTCCTGCACATAAAAGTTTATGAATCTTTcttaaatatgaaaattatttaaaacttacAATGATGGTTATGTCAGTGAGATGGCACCATATCTTGCAAGAATTGCAGTGTGTCTCACATTGAGAATGTTggaattatatttgttatttcaaCGTCTCAGATAATGACAATGTCCAAAATCTCTGTGGGTCGAagcatatatttacataaatctTCATAAGAGATTCAAATCAGAAAATCAGCGGATCCAGGACAATGTTTTAGtttgaaaacaatattttttccttcttgtttATAACTACCAAGCTTTGCAAAGGTTTGTCCTTATGTTCATTGTTGAAGATACTgtgtattaataaatgttaaggAAATGTt

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250420 lncRNA downstream 16649 15035169 ~ 15036895 (-) True G211363
TU250397 lncRNA downstream 52216 15000945 ~ 15001328 (-) True G211349
TU250411 lncRNA downstream 70412 14978619 ~ 14983132 (-) True rac1b
TU250394 lncRNA downstream 118423 14934669 ~ 14935121 (-) True G211346
TU250308 lncRNA downstream 206088 14847252 ~ 14847456 (-) True G211274
TU250752 lncRNA upstream 141717 15344509 ~ 15344731 (-) True G211688
TU250805 lncRNA upstream 268980 15471772 ~ 15472816 (-) False G211737
XR_003402916.2 lncRNA upstream 269152 15471944 ~ 15472817 (-) True LOC113528255
TU250806 lncRNA upstream 269156 15471948 ~ 15473343 (-) True G211737
TU250807 lncRNA upstream 269156 15471948 ~ 15472816 (-) False G211737
XM_026916124.2 mRNA downstream 1901 15038370 ~ 15051643 (-) True cacng5b
XM_026916674.2 mRNA downstream 67432 14979625 ~ 14986112 (-) False rac1b
XM_034310190.1 mRNA downstream 80960 14955058 ~ 14972584 (-) True LOC113528182
XM_026917169.2 mRNA downstream 106010 14941903 ~ 14947534 (-) True LOC113528557
XM_026917126.2 mRNA downstream 119383 14931916 ~ 14934161 (-) True amn
XM_026917092.2 mRNA upstream 375662 15578454 ~ 15581065 (-) True LOC113528505
XM_034309803.1 mRNA upstream 379812 15582604 ~ 15595204 (-) False LOC113528397
XM_034309802.1 mRNA upstream 379812 15582604 ~ 15595204 (-) True LOC113528397
XM_026916317.2 mRNA upstream 404652 15607444 ~ 15617384 (-) True LOC113528053
XM_034310048.1 mRNA upstream 404653 15607445 ~ 15616939 (-) False LOC113528053
XR_004579411.1 other downstream 363412 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 532569 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 562769 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 1023903 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 1047032 14004169 ~ 14006512 (-) False LOC113528401
XR_003402969.1 other upstream 268985 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 2090059 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 2090059 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 2090059 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 2090059 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile