RNA id: XM_034309840.1


Basic Information

Item Value
RNA id XM_034309840.1
length 2546
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC117598820
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21454118 ~ 21480442 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTGTATTTGCTCATCACTCACGACCAAGATCTCTAGCAAGTACAGAGAGAGGACTGTTCTCTGGATAAAATGAGAATACAGGTCATCTTTGGAATCCtgtggattttcacacaagctGCCATGGGTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGCTCTGGGACAACGACTGCACCTGCCAATGCCCCTGGAGGAAAAGTTAGAGCTAAAGATCATAGACATGACATCTACCTCTCATTTAATTATAAGTTATAGAAAAATCCAAAGTAACCCACCAAAACCAAATCCCCCAAGATGGCAGTTTGttaatgagagtaaaactatgATACTAACCAGTGCAGAGAGGAATGACTCTGGAACATACACTTTAGTCACCTTTGATGCAAACGGGAATCTTAAAGGCAATTATACTCTCCAGCTAAACACTGAAGCTGAGGTGTCCTCAGTGAAATTGTGGTACAGCTGCTTGTCCCCTGAAGTCATGAAAGTGTACTGTTCTGCTGATGGAGACAACCTCCGCTTCAACTGGACTTCTGATTTAATCACACTCCCTCAACTGGAGAACGGGAACAGCGCTCTCACACTGAATAAAGATCATCATGGAAAAGTCACCTGCCGTGTAGAAAATCATGTCAGCTATAACTACAATACCACTGAACTCCACCCATGTCCTGgTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGCTCTGGGACAACGACTGCACCTGCCAATGCCCATGGAGGATGGGTTAGACCTAAAGATCATAGACAAGACATCTACCTATCGTTTAATTATAAGATATAGAAAAACCCAAAGTAACCCACCAAAACCAAATCTCCCAAGATGGCAGTTtgttaatgataataaaactaTGATACTAACCAGTGCAGAGAGGAGCGACTCTGGAACATACACTTTAAGGACGTTTGATGCAAACGGGAATCCTAAAGACAATTATACTCTCCAGCTAAACATTGAGGCTGAGGTGTCCTCAGTGAAATTGTTGTACAGCTGCTTGTCCCCTGAAGTCATGAAAGTGTACTGTTCTGCTGATGGAGACAACCTCCGCTTCAACTGGACTTCTGATTTAATCACACTCCCTCAACTGGAGAATGGGAACAGCACTCTCATACTGAAGAAAGATCATCATGGAAGTGTTACCTGCCATGTAGAAAATCATGTCAGCTATAACTACAATACCATTGAACTCCACCCATGTCCTGaatctACAACTTCAGCATCATCTCTTGCACAGTTTACTAATGGCAAAGTTCCTGCTGATGGACCTACTACTGCAGTAGTCACTTCCACACTGTCTAATGATGGTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGCTCTGGGACAACGACTGCACCTGCCAATGCCCCTGGAGGAAAAGTTAGAGCTAAACATCATAGACAAGACATCTACCTCTCGTTTAATTATAAGATATAGAAAAATCCAGAGTAACCCACCAAAACCAAATCCCCCAAGATGGCAGTTTGttaatgagagtaaaactatgATACTAACCAGTGCAGAGAGGAGCGACGCTGGAACATACACTCTAAGCACGTTTGATGCAAACGGGAATTCTAGAGCCAATTATATTCTCCAGCTAAACATTGAAGCCGCGGTGTCCTCAGTGAAAGTGTGGTACGGCTGTTTGTCTTTTGATGTCACTAAAGCACACTGTTCTGCTGATGGAGACAACCTCCGCTTCACCTGGACTGCTGATTTAAACACAATCACTCAGCTGGAGGATGCAAACAGCACCTTGCTGCTGGATCAAAACCATCATGGAAACATCACCTGCCATGTAGAAAACCATGTCAGCCGTGTCCGTAACACCATTGAACTCCACCCATGTCCCGgtttcatggtgtttgtgtctgtgtggctcTGTGAATTCATCATCCTTCTGTCACTGTTATTGGGAGCGTTTTATATCTACACCAGAATCTacaggaaacagaaaataaCTGAGAATCAGGAAGCTCTGTAAACCTAGATTAGGAACAGAAGAAGCAGTCCACGATTGCTCTCCTCCATGCCAGCAATCCATCCACGGTGAACCAGCAGAAATGTATAAGCATAAATAACAGATGGGTAACatagaaaacaaattttattcCTCAATCCACGTCTTCTTTTCAAAAACTAAACCAGCCTCATGATTCCTTGATGAACCAAGTGCTACTTTTTAGAGTTGTTTCTctttagctttattttttaatattctaaaatattGCAATGCTTAAATGCTGCTGTTCCAATCATGCTTTTGTAGAAATCATTTTTGTAGActcttttataaatataaatctaagtTTATGTGTGGAGGTTGAAAAATGTCTGTTCTGAGCTGTTGCTTTTTGTTTcctgaaaaaaaacttttgaacagaatggagatgtgtacatttttcttatcttgcctaaatatcatattttttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254318 lncRNA upstream 5714 21426974 ~ 21448404 (+) True G214802
XR_004579359.1 lncRNA upstream 37605 21414462 ~ 21416513 (+) True LOC117598826
TU254313 lncRNA upstream 85890 21368024 ~ 21368228 (+) True G214798
XR_004579331.1 lncRNA upstream 95059 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA upstream 95059 21356850 ~ 21359059 (+) False LOC117598756
XR_004579360.1 lncRNA downstream 21695 21502137 ~ 21505786 (+) True LOC117598827
TU254327 lncRNA downstream 32129 21512571 ~ 21513040 (+) False LOC113540568
TU254249 lncRNA downstream 71107 21551549 ~ 21556401 (+) True G214747
TU254247 lncRNA downstream 77548 21557990 ~ 21565376 (+) True LOC113540569
TU254342 lncRNA downstream 136653 21617095 ~ 21617294 (+) True G214825
XM_034309847.1 mRNA upstream 23660 21405340 ~ 21430458 (+) False LOC117598821
XM_034309846.1 mRNA upstream 40638 21405340 ~ 21413480 (+) True LOC117598821
XM_026915990.2 mRNA upstream 51394 21390903 ~ 21402724 (+) True LOC113527856
XM_034309845.1 mRNA upstream 51394 21390903 ~ 21402724 (+) False LOC113527856
XM_034309848.1 mRNA upstream 67031 21381780 ~ 21387087 (+) True LOC113527892
XM_034309811.1 mRNA downstream 1580 21482022 ~ 21513034 (+) True LOC113540568
XM_034309843.1 mRNA downstream 34131 21514573 ~ 21563801 (+) False LOC113540569
XM_034309844.1 mRNA downstream 34131 21514573 ~ 21563801 (+) False LOC113540569
XM_034309842.1 mRNA downstream 34131 21514573 ~ 21521999 (+) False LOC113540569
XM_026937154.2 mRNA downstream 61548 21541990 ~ 21546092 (+) True LOC113540583
TU254301 other upstream 105032 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 105289 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 105289 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 105289 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 105289 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 165410 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 165638 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 166794 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 178060 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 179983 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile