RNA id: XM_034309847.1


Basic Information

Item Value
RNA id XM_034309847.1
length 1055
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC117598821
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21405340 ~ 21430458 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATCACTCATGACCAAGATCTTTAGCAAGTACAGAGAGAGGACTGTTCTCTGGATAAAATGAGAATACAGGTCATCTTTGGAATCCtgtggattttcacacaagctGCCATGGGTTTGCTGGTTCAGGATCCTGTTGTCTGTAGCTTTAATCAGAGTAATCAGTGTTATGTAGCTCTGGGACAACGACTGCACCTGCCAATGCCCCTGGAGGAAAAGTTAGAGCTAAACATCATAGACAAGACATCTACCTCTCATTTAATTATAAGATATAGAAAAATCCAAAGTAACCCACCAAACCCAAATCCCCCAAGATGGCAGTTTGTTAATGATAGTAAAACTACGATACTAACCAGTGCAGAGAGGAACGACTCTGGAACATACACTTTAGTCACCTATGATTCAGTTGGGAATATTAAAGGCAATTATACTCTCCAGCTAAACATTGAAGCTGAGGTGTCCTCAGTGAAATTGTCGTACAGCTGCTTTTTCCCTGGAGTCATGAAAGTGTACTGTTCTGCTGATGGAGACAACCTCCGCTTCAACTGGACTTCTGATTTAAACACACTCCCTCAACTGGAGAAAGGGAACAGCACTCTCACACTGAATAAAGATCATCATGGAAACGTCACCTGCCATGTAGAAAATCATGTCAGCTATAACTACAATACCACTGAACTCCACCCATGTCCTGaatctACAACTTCAGCATCATTTCTTGCACAGTCCACCAATGGCAAAGTTCCTGCTGATGGACCTACTACTGCAGTAGTCACTTCCACACTGTCTAATGATGGTGAGTCTCTCagttccttaattttttttttgtctttgtgtttgtatgtactAATTTTCTCACTGAGACTAACGATTACGTATTGACCAAAACACATCAAAAATGGCAGtgcttttaaaacaattaaacagaCATATAATATAGCACACTCTAAGTACTCCCAAGTGAATGTGTTTTACTCATGATACCAACTGGAACAAAGGTAACCAAACACAGACAGGGATCTGTAACAGTCGAGAAATGCTGTGagaacacaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254313 lncRNA upstream 37112 21368024 ~ 21368228 (+) True G214798
XR_004579331.1 lncRNA upstream 46281 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA upstream 46281 21356850 ~ 21359059 (+) False LOC117598756
TU254255 lncRNA upstream 160555 21198542 ~ 21244785 (+) True G214753
TU254231 lncRNA upstream 219037 21185266 ~ 21186303 (+) True G214731
TU254320 lncRNA downstream 17535 21447993 ~ 21466726 (+) True G214804
TU254324 lncRNA downstream 44175 21474633 ~ 21474963 (+) True G214807
XR_004579360.1 lncRNA downstream 71679 21502137 ~ 21505786 (+) True LOC117598827
TU254327 lncRNA downstream 82113 21512571 ~ 21513040 (+) False LOC113540568
TU254249 lncRNA downstream 121091 21551549 ~ 21556401 (+) True G214747
XM_026915990.2 mRNA upstream 2616 21390903 ~ 21402724 (+) True LOC113527856
XM_034309845.1 mRNA upstream 2616 21390903 ~ 21402724 (+) False LOC113527856
XM_034309848.1 mRNA upstream 18253 21381780 ~ 21387087 (+) True LOC113527892
XM_034309849.1 mRNA upstream 18253 21381780 ~ 21387087 (+) False LOC113527892
XM_034309781.1 mRNA upstream 56423 21341189 ~ 21348917 (+) False hopx
XM_034309840.1 mRNA downstream 23660 21454118 ~ 21480442 (+) True LOC117598820
XM_034309811.1 mRNA downstream 51564 21482022 ~ 21513034 (+) True LOC113540568
XM_034309843.1 mRNA downstream 84115 21514573 ~ 21563801 (+) False LOC113540569
XM_034309844.1 mRNA downstream 84115 21514573 ~ 21563801 (+) False LOC113540569
XM_034309842.1 mRNA downstream 84115 21514573 ~ 21521999 (+) False LOC113540569
TU254301 other upstream 56254 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 56511 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 56511 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 56511 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 56511 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 215394 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 215622 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 216778 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 228044 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 229967 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile