RNA id: XM_034309849.1


Basic Information

Item Value
RNA id XM_034309849.1
length 1021
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC113527892
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21381780 ~ 21387087 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCATGACCAAGatcaagacagaaagagagagaggaggacagTTCTCTAAACGAAATGAGAATACATGTCATCTTTGGTATCCTTTTGATTTTCACAGGAACTGTCATGGGTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTAATCAGCGTaatcagtgttgtgtagctctgGGACAACGACTGCACTTGCAAATGGTCATGGAGGATGGGTTGGTCTTAAATAAGAACAACGGGACATTTGACAAGGCTGTCATTTTGAGATATAGAAAAACCCAAAGTAACCCACCAAAACCAAATTCCCCAAAATGGCAGTatgttaatgataataaaactataatacTAATAACCATTGCAGAGAGGAGTGACTCTGGAACATACACTTTAGACATCTTTGATgcaaaggggaataaaaaaGACAATTATACTCTCCAGCTAAACACTGAAGCCACGGTGTCCTCAGTGAAAGTGACATACAGCTGCTTGTCTCCTGAGCTCAGAAAAGTGTGTTGTTCTGCTGATGGAGACAACCTACGCTTTCACTGGAACTCTGATTTAATCAAACTCACTCAACTGGAGGACGAGAACAGTGCTTTCCTGCTGGATAAAAACAATCATGGAAATGTTAGCTGCCACGTAAAAAATCATGTCAGCCATGACCATAACACCATTGCTGTCCACCCATGTCCCAgtttcatggtgtttctgtctgtgtggctATTTGAAGTCATCATCCTGGTGTCTTTGTTTGTGGGAGCATTTTACATCTACACCAGAACCTACACATCAACTGAGAATCCAGGACCAGGAAGCTCTGTAAACCTGAATTAGGAATTGAAGAAGCAGTCCATGGTTGCTCTTCTCCATGGTAGCAATCATCACTCTCCATCCCATCCAGCCTTTTTCAAGAAACAAATTCAGCCTCATCAATCCTgcagattccttcattaattgaGTACTACTTTTAGAGTTATTTCTGTTCAGATTTGTTTCTAATATTCTGTCAGGTCAACTTTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254313 lncRNA upstream 13552 21368024 ~ 21368228 (+) True G214798
XR_004579331.1 lncRNA upstream 22721 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA upstream 22721 21356850 ~ 21359059 (+) False LOC117598756
TU254255 lncRNA upstream 136995 21198542 ~ 21244785 (+) True G214753
TU254231 lncRNA upstream 195477 21185266 ~ 21186303 (+) True G214731
TU254315 lncRNA downstream 19286 21406373 ~ 21464629 (+) True G214800
XR_004579359.1 lncRNA downstream 27375 21414462 ~ 21416513 (+) True LOC117598826
TU254318 lncRNA downstream 39887 21426974 ~ 21448404 (+) True G214802
TU254320 lncRNA downstream 60906 21447993 ~ 21466726 (+) True G214804
TU254324 lncRNA downstream 87546 21474633 ~ 21474963 (+) True G214807
XM_034309781.1 mRNA upstream 32863 21341189 ~ 21348917 (+) False hopx
XM_026916224.2 mRNA upstream 32863 21341297 ~ 21348917 (+) False hopx
XM_026916510.2 mRNA upstream 53026 21301643 ~ 21328754 (+) True sec24b
XM_026916148.2 mRNA upstream 87986 21288480 ~ 21293794 (+) True LOC113527948
XM_026916778.2 mRNA upstream 154932 21206459 ~ 21226848 (+) True f8
XM_026915990.2 mRNA downstream 3816 21390903 ~ 21402724 (+) True LOC113527856
XM_034309845.1 mRNA downstream 3816 21390903 ~ 21402724 (+) False LOC113527856
XM_034309847.1 mRNA downstream 18253 21405340 ~ 21430458 (+) False LOC117598821
XM_034309846.1 mRNA downstream 18253 21405340 ~ 21413480 (+) True LOC117598821
XM_034309840.1 mRNA downstream 67031 21454118 ~ 21480442 (+) True LOC117598820
TU254301 other upstream 32694 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 32951 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 32951 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 32951 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 32951 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 258765 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 258993 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 260149 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 271415 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 273338 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile