RNA id: XM_034309886.1


Basic Information

Item Value
RNA id XM_034309886.1
length 3723
RNA type mRNA
GC content 0.47
exon number 21
gene id atp6v0a1a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6794354 ~ 6820369 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCCGTGACGTCACTCGCGTTGTCCGAGGCTGATCAGCTGATCACACAGAGAGGAGACAGCCGCGGGATAGAAACACACAGGGACGCTTTAATTCACCTTATATTACTGtattGTGTTctctggtggtggtggtgtgagCGCTAGCGTAGCGTCATGGGGGAGCTGTTCCGCAGCGAGGAGATGACTCTGGCCCAGCTCTTCCTGCAGTCCGAGTCTGCCTACTGCTGTGTCAGCGAGCTCGGGGAGATCGGCATGGTGCAGTTCAGAGACCTGAACCCTGATGTGAACGTCTTCCAGAGGAAGTTCGTGAATGAAGTGCGTCGTTGCGAAGAGATGGACCGCAAACTGAGATTTGTTGAGAAGGAGATAAAGAAGGCCGGTATACTCATTGTGGACACAGGAGAGAACCCGGAGGTCCCTTTCCCTCGAGACATGATTGACTTGGAGGCCACGTTTGAGAAGCTGGAGATCGAGCTGAAGGAGATCAACACTAACCAGGAAGCCCTGAAGAAGAACTTTCTGGAACTGACTGAGCTCAAACACATCCTCAGGCGCACACAGCAGTTCTTTGATGAGATGGAGGACCCTGCTATACTGGAGGAATCGTCCATTCTGCTGGACCCGACTGAGATTGTCCGAGCTCCTCTCAGGCTTGGCTTTGTGGCAGGCGTGATTGGCCGAGAGAGGATTCCCACCTTTGAGAGGATGTTGTGGAGAGTCTGTCGAGGCAATGTGTTCCTGCGCCAAGCAGACATCGAGGACCCCCTGGAGGACCCCACTACGGGCGACCAGGTGCACAAGTCGGTGTTTATCATCTTCTTCCAGGGAGATCAGCTGAAGAATAGGGTGAAGAAGATCTGCGAAGGGTTTCGGGCTACACTGTACCCCTGCCCTGAGACTCCGcaagagagaaaggaaatggCAGCAGGAGTCAACACTCGTATCGATGACCTCCAAATGGTGCTGAATCAGACGGAGGATCACAGACAGCGCGTCCTACAAGCCGCCGCTAAGACCCTGCGTGTGTGGTTTATTAAAGTGAGGAAGATGAAGGCCATCTACCACACGCTCAATCTCTGTAACATCGATGTCACCCAGAAGTGTCTGATTGCTGAAATCTGGTGTCCTTTGTCAGACCTGGACTCCATTCAGCTCGCTCTGAGGAGAGGCACGgaGAAAAGTGGTTCCACCGTTCCCTCCATCCTGAACAGGATGCAGACCAAACAGATCCCACCCACCTATAACAAGACCAACAAGTTTACCTCTGGCTTCCAGAATATTGTGGACGCATATGGCATTGGCAGCTACCGAGAAATTAATCCAGCACCCTACACTATCATCACCTTCCCCTTCCTGTTTGCCGTCATGTTTGGGGATCTGGGCCACGGCATACTGATGACCAGCGCCGCTCTTTATCTGGTTCTGCGAGAGAGACGGCTCAGCGCCCAGAAAAATGACAATGAGATGTTCAGCATGCTGTTTTCAGGGCGTTACATTATTCTACTGATGGGGCTTTTCTCCATCTACACCGGGATCATCTATAACGACTGCTTTTCCAAGTCGATCAACGTCTTTGGCTCCAGCTGGAGTGTGCGACCCATGTTTGAAACAGGAAAAGGCAACTGGACGTTTGAGGTTCTGGAGGAGAACAATCTGTTGCAGTTGGACCCCGCCGTGCCAGGAGTGTTTGGGGGACCCTACCCCATCGGCATTGACCCGATCTGGAACATGGCCACCAACAAGCTGACCTTCCTGAACTCCTATAAGATGAAGATGTCTGTAATCTTGGGAGTTACTCAGATGCTCTTTGGAGTCACACTCAGCCTCTTTAATCACATCTACTTTAAGAAGCCTCTGAACATCTGGCTGGGCTTCCTCCCTGAGATCATCTTCATGAGCAGCCTGTTCGGTTACCTGGTGCTGCTCATCTTCTACAAGTGGACCGCGTACAACGCTGCAACCTCCAAGGAAGCTCCCAGCCTCCTCATCGCCTTCATCAACATGTTCCTCTTCAACTATAATGACCCTACTGTCAAACAGCTATACAGaggacagacaGTGATCCAGTGCCTGTTGGTGGTCATCGCTCTTTTATGCGTGCCCGTTATGCTCATAGTAAAGACGCTGGTTCTGCGCAGACAGTACCTCTGGAGGAAGCACCTTGGCACTCAGAACTTTGGGGGGATCCGGGTGGGCAACGGCCCTACAGACGATGAAGCCGAGATCATCCAGCATGATCAGCTCTCCCAGAACATAGAGGAAGAGCCAGAGTTTAATTTTGCAGATGTAGTGGTGTATCAGGCCATTCACACTATAGAGTACTGCCTAGGCTGCATCTCAAATACGGCCTCCTACTTACGCCTGTGGGCCCTGAGCCTAGCCCACACACAGCTGTCAGAGGTCTTGTGGTCCATGGTGATGCACATCGGACTCTACTCTAGAAATTTTGCTGGCTGCTTGGGcctaattttcatttttgctatCTTCGCCACACTGACGGTGTGTATCTTACTGATAATGGAGGGTCTGTCTGCCTTCCTGCACGCCCTCAGATTGCACtgggtGGAGTTTCAGAATAAGTTCTACACCGGTCAGGGCTTCAAGTTCATGCCCTTTACCTTCGACAGCATCCTGGAGGGAAAGTTTGAAGACTGAACATCCTCCACCTTCTCAGCCTTCCTCCACCATCACACCCCCCAAATCCTCCACTAAAACGCCAGTCAGAGTAGCAGTAATGAGAGGAAGAGATAAGAGCTCCATCATTAATACATATATCAGGTGAAAAATAATCATGGGCGCTACATTATCGTGTATCACATTAATTCTGCTCTCATATTTAAATTCCATAATTTAGGATTTGTTTGTATGGCGTGACACATCTTCATAAATAAGCTAATTTGTTTGTTCAAAGAAGAACTGAGGAATATTTAAATGCTTTGTATGAAGTGGTTGTTTGTCTTATATACAGTACGTTGTGCTGTTTTCTGGCCTCAGTCTGATTTCACTACCATGTTTCTCTCTActcagtgttgtgtttattgtgtactTCCTTATCTGTTTGGGTCGTAACAGACAATTTTTAACTAGTCACgcctcctccttttcctctgtctgtctttcattcAAAGGGACTTGATGCAAAACTCAGAGGGAAGCACTTCAAAATTCCCTTTTAttatttccacaaaaaaaaatctatttacatCTGTTCACATATGTTTTACATAGTGAGCActttttgtgattattttgtgCTTTTCCCCCTCCCCAAACAACATATCTGAACTTGATAATCCACACATATATCATGAAGGTGGTACTGTGGGCTATTAGTGGTTGACTGGTTGAATATCAGGAAACTTcacgctaaaaaaaaaaacaactactaCTCACTAAGCCATGGATACATAGTTGTTGTTTCACCGCTCATCATTAGTCTttgtgttagtttttttttttctttgtagttGTACACTTTGTTTATGGGCACTCTCAATAAGCCACAGAAATCACTTTTAATAAGTTAAAAGTTAAATCAGCTAAAAGTGTCTCATTGTGTCTCattttggtgtgttttattttgtttctttgacAAACCAAGTGTCATAGCTCTTGCAGGCAGAGCTAAAACGCAGCAGGAATTTGCAATGTCAAATTTTATGAAGGAAAATGAaggatgttgtgtgtgtttgtcaatAAAAGGCGAGGCTGGGAAATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244981 lncRNA downstream 146540 6646097 ~ 6647814 (-) False stat5a
TU244696 lncRNA downstream 447991 6273816 ~ 6346363 (-) True G206649
TU244662 lncRNA downstream 590158 6203312 ~ 6204196 (-) True G206628
XR_003402891.2 lncRNA downstream 604428 6187474 ~ 6189926 (-) True LOC113527891
XR_003402949.2 lncRNA downstream 840850 5952798 ~ 5953504 (-) True LOC113528476
TU245006 lncRNA upstream 4527 6824896 ~ 6825760 (-) True G206924
TU245005 lncRNA upstream 5999 6826368 ~ 6828146 (-) True G206923
TU245188 lncRNA upstream 281879 7102248 ~ 7102389 (-) True G207057
TU245372 lncRNA upstream 356163 7176532 ~ 7176755 (-) True G207198
TU245396 lncRNA upstream 407016 7227385 ~ 7227664 (-) True G207221
XM_026916325.2 mRNA downstream 819 6773433 ~ 6793535 (-) True cavin1a
XM_026916393.2 mRNA downstream 29440 6734117 ~ 6764914 (-) True stat3
XM_034309888.1 mRNA downstream 40752 6734117 ~ 6753602 (-) False stat3
XM_026916395.2 mRNA downstream 68189 6646058 ~ 6726165 (-) True stat5a
XM_026916398.2 mRNA downstream 73360 6646058 ~ 6720994 (-) False stat5a
XM_026916777.2 mRNA upstream 26526 6846895 ~ 6860907 (-) True stk17al
XM_026916996.2 mRNA upstream 68293 6888662 ~ 6890923 (-) True tmem86b
XM_034310127.1 mRNA upstream 78638 6899007 ~ 6916995 (-) True gys1
XM_034310124.1 mRNA upstream 78638 6899007 ~ 6916812 (-) False gys1
XM_034310123.1 mRNA upstream 78638 6899007 ~ 6916812 (-) False gys1
TU244626 other downstream 599358 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 833304 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 833304 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 843357 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 952877 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 450537 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 451886 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 452688 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 453937 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 498234 7318603 ~ 7321962 (-) True G207231

Expression Profile