RNA id: XM_034309890.1


Basic Information

Item Value
RNA id XM_034309890.1
length 2594
RNA type mRNA
GC content 0.54
exon number 13
gene id gtpbp1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 26087441 ~ 26118059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gGCATCGATGGCGGCTGCCGAGCCGGGGTTAAACCCAGGGCCAATGTCAGCCACTGAGTCTTTGGTTCCTGCTAGCATGTTCGCTCCAGCCGGCCGGGGCTGTGGGGACGACGCCGGGGCAGAGTGCTTCGAGGACGGCGAGGCGCTCAACGGCGAGGCCGGGGATTTCTCCAGCAAGTTGGCTCTGGTCAGTCCTAACGGAGAGCAGTACGACTCGTTACTGCGGCAGCTGCGAGAGCGGATGGACGAGGGCTGTGGCGAGACCATTTACGTGGTGGGCGTGGGGTCAGACGGCGGCGATTACGGTCTGAACGAGAGCGACATGGAGGCGTCGGTGGCCACGGTGCAGTCCCTGTGCGAGCAGATCGAAGCCGACCTCATCCTCCTGAGAGAGCGCACGGAGAGCGGCGGCCAGGTCCGCGATTACCTCATCCGCCGCCGCGTCGGCGAGGCAGACTTCCTGGAGGTCAGgGTGGCGGTGGTAGGGAATGTGGATGCGGGGAAGAGCACGCTCCTCGGAGTCCTCACACACGGAGAGCTGGATAACGGTCGAGGTTTCGCTCGGCAGAAACTTTTCCGTCACAAGCACGAGCTGGAGAGCGGCCGCACCAGCAGCGTGGGGAACGACATCCTGGGCTTCGACCGTCACGGCCGCGTCGTCAACAAACCCGACAGCCACGGCGGCAGTCTGGACTGGACCAAGATCTGTGAGAAGTCCTCCAAGGTCATCACCTTCATCGACCTGGCGGGACACGAGAAGTACCTGAAGACCACCGTGTTCGGCATGACCGGCCACCTGCCCGACTTCTGCATGCTCATGGTGGGCAGTAACGCAGGTATAGTGGGAATGACTAAAGAACACCTGGGCTTAGCGCTGGCTCTAAACGTGCCCGTGTTTGTGGTGGTCACGAAGATAGACATGTGTCCTGCTAACATCCTGCAAGAGACGCTGAAGCTGCTGCAGAGGTTACTGAAGTCTCCCGGCTGCAGAAAGATCCCAGTGCTGGTGCAGAACAAAGACGACGTCATCGTCACTGCCTCCAACTTCAGCTCCGAGAgAATGTGCCCAATTTTCCAGATTTCTAACGTCACAGGGGAGAACATGGACCTCTTGAAGATGTTCCTGAACCTGCTGTCCTCCAGAACGTCGTTTAAAGATGATGAGCCGGCCGAGTTTCAGATAGACGACACCTATTCAGTAccgggtgtaGGGACTGTAGTATCGGGAACGACGTTACGAGGGCTGATCCGGCTGAACGACACCATGCTGCTGGGGCCGGACCCCCTCGGTGCCTTCATCCCCATCGCTGTTAAATCCATCCACAGGAAGAGGATGCCCGTGAAGGAGGTGCGAGGAGGACAGACGGCGTCTTTCGCTCTCAAAAAGataaaGCGCTCGTCTATAAGGAAAGGGATGGTGATGGTGTCGCCGCGGTTAAACCCACAGGCATCATGGGAGTTTGAGGCAGAGATCCTGGTGCTCCATCACCCAACAACCATCTCACCCCGATACCAGGCCATGGtgcattgtgggagcATCAGACAGACGGCGACGATCCTGACGATGAACCGAGACTGTTTACGAACAGGAGACAAAGCCACGGTGCACTTCCGCTTCATCAAAACCCCCGAGTACCTGCATGTGGACCAGAGACTGGTGTTCAGAGAGGGCAGGACCAAAGCTGTGGGCACCATCACCAAGATGCAGTCGACGAAGAAGGTGGTGAAGAGAGAGGAGGGTCAGATAGCAGGAGGAGAGGAGACGCCGAGCAGCGCGACACCGACCGCCTCCATCCCTCCACTACAGcagACTGAGGGAGATGAAGACACTCAGACTAAAGACTCCAAGccAAAGTCTGGAGGCAGGCGACGAGGCGGGCAGAGGCACAAGGGGAAGAGTCAGTCCGGCGCCACAGCGCCTCCTGCTGGTGCAGTCGGAGGCTGTTAAACCCCGCTCCACTCCGTCACACTCAATTTTGTAGCTTATAGAAGACGTGAAAACAGGCAGCTGCCTCCACCACTCATTTATTTTAcgcttttattttaaactcgGACCACAGCACTGCTTCTTCTACACAGAACCACACGGAACCACCATGCAGTGTCCGGCACACGTAGAAACAGTGAATCGTGCGTTCTTAGAGCTTTACGTTGACGTTATTAAAGTTCTGATGAAAGAAGCAGAGGAACTGCATGATGgttctttactgttttttttctccgtttcattttaaaatgtcggTGGTGCTGCCGTGTGTAGAGAAGAACACGAAGGaggatgatgctgatgatggaAGTTGCTCTGCATTAAACATGGCATTATGCACAGACTAAACAACTCGTTCTAGTAACCTTTGTAGataaaattctgtttaaggtttgtgatgataaaaaaaaaaatcatacgataaaataaagaaaaatgtttcatcacattGTCAGTAGTGGTGATTGGAGATCCTCAGAATTTTCACACTTGATCTATAAAGTTAAAATACTGCATTATTGTTTACATGTTTGTGAAACTGCACACGGTGTTCCTCAGTAACACTCCGCTACAGAACAATAAACTGACACAAACAACAGGTTACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402457.2 lncRNA upstream 1201 26080154 ~ 26086876 (+) True LOC113523785
TU257228 lncRNA upstream 15397 26067748 ~ 26072680 (+) True G217175
TU257115 lncRNA upstream 186588 25900074 ~ 25901489 (+) True G217082
TU257061 lncRNA upstream 197630 25796304 ~ 25890447 (+) True G217035
TU256812 lncRNA upstream 692194 25395622 ~ 25395883 (+) True G216817
TU257220 lncRNA downstream 22518 26140577 ~ 26146174 (+) True G217170
TU257268 lncRNA downstream 81206 26199265 ~ 26205038 (+) True G217193
TU257286 lncRNA downstream 125650 26243709 ~ 26247946 (+) True G217211
TU257259 lncRNA downstream 139312 26257371 ~ 26301906 (+) True LOC113523791
TU257266 lncRNA downstream 139312 26257371 ~ 26301906 (+) False LOC113523791
XM_026909845.2 mRNA upstream 55815 26028298 ~ 26032262 (+) True LOC113523788
XM_034309787.1 mRNA upstream 80380 25986792 ~ 26007697 (+) True LOC113523768
XM_034309788.1 mRNA upstream 80380 26003952 ~ 26007697 (+) False LOC113523768
XM_034310223.1 mRNA upstream 115111 25956766 ~ 25972966 (+) True rac2
XM_034309670.1 mRNA upstream 149852 25931431 ~ 25938225 (+) True LOC113523801
XM_034310131.1 mRNA downstream 2975 26121034 ~ 26145128 (+) False sgsm3
XM_034310132.1 mRNA downstream 3038 26121097 ~ 26145128 (+) True sgsm3
XM_034310129.1 mRNA downstream 3038 26121097 ~ 26145128 (+) False sgsm3
XM_034309823.1 mRNA downstream 166485 26284544 ~ 26296646 (+) False LOC113523791
XM_034309804.1 mRNA downstream 187387 26305446 ~ 26306768 (+) False ier2a
trnai-uau_8 other upstream 732485 25355500 ~ 25355592 (+) True trnai-uau_8
trnai-uau_7 other upstream 733209 25354776 ~ 25354868 (+) True trnai-uau_7
TU256462 other upstream 1290399 24797254 ~ 24797678 (+) True G216515
TU256141 other upstream 1549035 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256100 other upstream 1630073 24457070 ~ 24458004 (+) False G216197
TU257298 other downstream 187388 26305447 ~ 26306767 (+) True ier2a

Expression Profile