RNA id: XR_004579365.1


Basic Information

Item Value
RNA id XR_004579365.1
length 3209
RNA type misc_RNA
GC content 0.47
exon number 10
gene id mapk3
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6160334 ~ 6175366 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCACTTGtggccacacacatacacgcacgcgcgcgcgcacacgcactAAGGGGGCGCTTTAACGACTCCTGTTCGCCTGTCAGTTCAAGTGCGACGTCGACAGGAGCCGCGGTGATTTTATTCACGGAAATAAACGACGCTGTCGTTAAGCTGAAATCGGTAGAAGGCCCCCCTCCACGACCGAGCGCCGGAACCGAGCGGGATTAGTGGAGCGGAACGATGGCGGAGTCGGGCAACAGCGcagcggcagcagcagcagcaggagccgCGGGCTCGAACGGCAGCGCCGCCGATGCTGGAGGAACAGCCGCGCCCGGTGGAGCCACTGGAGCCGCGGGATCCAAACCCGGCCTGGAGTCGGTGAAAGGACAGAATTTCGACGTGGGCCCGCGCTACACCGACCTCCAGTATATCGGGGAGGGGGCCTACGGGATGGTGTGCTCTGCTTTTGACAATGTGAACAAGATCCGAGTGGCCATTAAGAAGATCAGCCCGTTCGAGCACCAGACGTACTGCCAGCGCACGCTGAGAGAGATCAAGATCCTGCTGCGCTTCCGCCACGAGAACATCATCGGGATCAACGACATCCTGAGAGCGCGCCGCATCGACTACATGCGCGACGTCTACATCGTCCAGGACCTGATGGAGACAGACCTGTACAAGTTGCTGAAGACCCAACAGCTCAGCAACGACCACATCTGCTACTTTCTGTACCAGATCCTGCGTGGGCTGAAGTACATTCACTCTGCCAACGTCCTCCACAGAGACCTGAAGCCCTCCAACCTGCTCATCAACACCACCTGTGACCTCAAGATCTGTGACTTTGGGTTGGCGCGGATAGCCGACCCAGAGCATGACCACACTGGATTCCTCACAGAGTACGTGGCCACTCGCTGGTACCGTGCTCCAGAGATCATGCTCAATTCCAAGGGCTACACAAAGTCCATTGATATCTGGTCAGTAGGTTGCATCCTGGCTGAGATGTTGTCCAATCGGCCCATTTTCCCAGGAAAGCACTATTTGGACCAACTGAATCATATACTTGGTATCCTGGGATCTCCTTCTCAAGAAGATCTAAACTGTATAATCAACATGAAAGCCAGGAACTACTTGCAGTCTCTCCCACAGAAGCCCAAAATTCCCTGGAACAAGCTCTTCCCCAAGGCGGATAGCAAagCTCTGGATTTGTTGGACCGCATGTTGACCTTTAACCCTATCAAGCGTATAACGGTGGAAGAAGCACTGGCACACCCTTACCTGGAGCAGTACTATGACCCCACTGATGAGccggTGGCTGAGGAGCCCTTCACCTTTAACATGGAGCTAGATGACCTTCCTAAAGAGAAGCTGAAGGAACTCATCTTTGAGGAGACCGCACGATTCCAGGCCAACTACCAAGGCTCCTGAGGGAAGCAAGCACCCAAGGAGAGCGATCAAGCCACGCTAAGGCTAAGAACAAGATAACTCCAAACAAGCTACAAAAGATGTACACACATgatAAGCGTAATTTATCTCAGATTTTAACCGCTGATCCCTTGACATCGCTTTCCTCCAGCACCTGCAGCATTCCTTCACATTCTTTCTCCTCACACGTTGCCAGTTGAGGAGGCATAGCCAAGCCGAACGCTTTCAGAGCCATAGCACACACTCCTTCCCCCCTGGTGATGTCACAATTTCTTCAAAAAGGGCTTTTTTCCACGGGGCTTGCTGACCTCAACGCCTCTCTCGTCTGTGATTGGCTGACCTTGTGATAATGTAGTCTGTGTCTGGCTGACTTTGCATGCACCAAATCACAGGTAGTGTTTCCTATTTTCCTGCTCGTTTGAAGAAGTGTTATTGCCTCGTTTGTTTCCTGCAACTGACTAAACGCCTGTAACAACGCAGATATATGCTTTTTGTCCAGTCTCCGATGAGGAAAGCTAGCTCTAGATAGGGGGAAtggaaaaatttttaaatagtgGGGTGTGTTTGTCTTTGAATAAAAGCCAGGCTTGATTTCTACACCGatgttaatgttgttgttgataTTCCTGTGTGGGGGAAAACAAAAGTGCACCCTACAGCACGTTTCATACATCGGTCGAATGACGTTCTTCAATCTGTGCACCTGCACTTTTTGTCTCACGACCaaatgctttgttttatttcttcttttttttttttttttcctggtgcaGTTTTGCTCTGTCCTCTTTCCTGTCTTCTCTTTATAGAAACTTTTTGATCGATGGAGACATGCCATAACTCCTGTAGTACTCGCTCCATTTCGGTCCcgctttctttttctcttctatGGCACTCTGCTTTTTCTCTTGCTTTGCCGGTGCATTGTGGGACAGGAAGGCACAGATGGTCGGGCTGCATCCCCATGTCTGtgtctgcatgtctgtctgtttcGGCTTTGAGCTGTTTTTCCTCCGCGTCCTCTCGCTGCGAGTGACTCCACGCCGCTCACTGAGCCGAGGGGAACAAATCTTTACCAAGGAAAAATTTGTTATGCCGCCTTGTCGTTGATGTATTGCTTATTTACAAATGGGACCACAGGGACTGAAcaatcacacagcacacacctaCAGATATCCCTCACTCACACAAGCAGTATATGATTTGAGACCTACAAATGAGGCAGATTTAACAATGTCCTTTTAATGGCTGTTCTTATAATTATTGCTGTTATATTgatgagtcttttttttttaagaactgaAAAAGGGATGTAAaacttttgtccttttttttctttcatttctttcattgtgtgtgaaaattaaTTGGGTGTGTCGTCACTCTATctgaaatctatttttttttttcccctgaatcttttaaggatttattttaaaagatgatTTAAAGCTATGAGTAGACTGTCAAGAGATATGAACCATGGATGGTTTTAGTGTATGTACATGCTTATGGGTATTATGaattaaacaattaacaaagaaacagacttatatacatatattaaataaaaattgctgaTACTGTTATTTGGGATGTGTTGCATTTTTCCTTTGAATGTTGTTTCATCAGTATTGCAGAAGACATCAGTCTCGACTCATTTTTTCTGCCAGTCATATCATCACGCATTTGATTTTGGATGCTTTTGAAGGTGTTAACAAAGTGTTTACGTAACGTTTACAGAAAAAAGATGTTCTTACCATCACGCAAAAATGTATCCATATATTAAACAAGGAAGTCTTTG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244306 lncRNA upstream 168262 5990607 ~ 5992072 (+) True G206339
TU244238 lncRNA upstream 196253 5937248 ~ 5964081 (+) True G206291
TU244254 lncRNA upstream 215902 5940879 ~ 5944432 (+) True G206301
TU244235 lncRNA upstream 235149 5918445 ~ 5925185 (+) True G206289
TU244231 lncRNA upstream 262134 5897385 ~ 5898200 (+) False tmem98
TU244377 lncRNA downstream 4730 6180096 ~ 6194964 (+) False ypel3
TU244409 lncRNA downstream 76978 6252344 ~ 6253065 (+) False LOC117598831
TU244542 lncRNA downstream 308313 6483679 ~ 6509229 (+) True G206540
TU244777 lncRNA downstream 375525 6550891 ~ 6551152 (+) True G206722
TU244866 lncRNA downstream 514090 6689456 ~ 6737847 (+) False G206801
XM_026917045.2 mRNA upstream 12716 6138100 ~ 6147618 (+) True cln3
XM_034310028.1 mRNA upstream 25762 6130780 ~ 6134572 (+) False si:ch211-198p11.6
XM_034310027.1 mRNA upstream 25762 6130809 ~ 6134572 (+) False si:ch211-198p11.6
XM_026916485.2 mRNA upstream 31523 6119493 ~ 6128811 (+) True zgc:100868
XM_026916487.2 mRNA upstream 31523 6119525 ~ 6128811 (+) False zgc:100868
XM_034310099.1 mRNA downstream 5433 6180799 ~ 6188261 (+) False gdpd3a
XM_026916041.2 mRNA downstream 5435 6180801 ~ 6188261 (+) True gdpd3a
XM_026917286.2 mRNA downstream 14725 6190091 ~ 6194481 (+) False ypel3
XM_026916099.2 mRNA downstream 22274 6197640 ~ 6204209 (+) True LOC113527922
XM_026916615.2 mRNA downstream 30174 6205540 ~ 6212540 (+) True LOC113528207
TU244359 other upstream 25763 6130783 ~ 6134571 (+) True si:ch211-198p11.6
TU244360 other upstream 25763 6130783 ~ 6134571 (+) False si:ch211-198p11.6
TU244082 other upstream 499486 5657612 ~ 5660848 (+) True G206166
XR_003402965.1 other upstream 1069002 5091248 ~ 5091332 (+) True LOC113528649
XR_003402966.1 other upstream 1069418 5090832 ~ 5090916 (+) True LOC113528650
TU244376 other downstream 14799 6190165 ~ 6194964 (+) True ypel3
TU244415 other downstream 79102 6254468 ~ 6260857 (+) False LOC117598831
XR_003402939.2 other downstream 909075 7084441 ~ 7096679 (+) False eftud2
XR_004579327.1 other downstream 932812 7108178 ~ 7115935 (+) False LOC113528597
trnac-gca_18 other downstream 1097094 7272460 ~ 7272531 (+) True trnac-gca_18

Expression Profile