RNA id: XM_034309896.1


Basic Information

Item Value
RNA id XM_034309896.1
length 4441
RNA type mRNA
GC content 0.44
exon number 16
gene id abat
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24385737 ~ 24418546 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGACCAGCGCTCTCGTGCAGAAGCCAGTCTCCTAGCGACGTGTTGAAATCTGAGCTTCTCTGTTCATCTGAACGACctgaaattttgttttatttctttagttatttgtttttccTCAGCTTCAACTAAACGTCCCAGCTTTCCGAAGAGCAGAAAACGTACTTGGTTTGTGAAAGGCAGGTGCTCTGagcccctgtctctctctctctctctctctctctctctctctctctctttttgtctctctccttttctaaGAGCTCTACATGGCGCTCCTCAGCCGCCACCTGACTCTCTCCCTTCAGCGGAACCTGCGCCTTGTGACTCCAGGCTGCAGATATGTCAGTCAGACAGCTACGAAGACTGTGTCTGAGTTTGAATACGACGCTCCGTCCATGAAGACTCCTGTTCCAGGGCCCAGGTCAAAGGAGCTGACAAGACAGCTGGGAGAAATTCAGaaCGTGGGCGCGATTAATTTCTTCTGTAACTACGAGGAGAGTCGGGGAAACTACCTGGTGGATGCTGATGGCAACCGAATGCTGGATCTGTACACACAGATCTCCTCCATTCCTCTGGGTTATAATCATCCAGCTTTGATGAAAGCACTCGCCAATCCCAACAATCTGAGTGCATTTGTCAACCGGCCAGCCCTTGGAATTCTGCCACCTGAGAATTTTCCTGAAAAGCTGACTGAAAGTCTGCTTTCGATCGCTCCCAGTGGAATGACCCGGGTGCAGACCATGGCGTGCGGCTCCTGCTCCAACGAGAACGCCTTCAAGGCTATGTTCATCTGGTACAAAAACAAAGAGAGAGGCACCAATGATCCTTCACCAGAGGAAACGAGCTCCTGTATGATTAACCAGagacCTGGATGTCCAGATCTGAGCATCCTGTCCTTCATGGGAGCGTTTCACGGCAGAACTATGGGTTGCTTGGCCAcgacacactccaaaatcatTCACAAGCTGGACATCCCGTCGTTCGACTGGCCCATCGCGCCCTTCCCCAGGCTCAAGTATCCGCTGGAGGAGTTTGTTCGAGAGAACGCCCAAGAGGAGGCTCGCTGTCTCGAGGAGGTGGAGGATCTGATCGTGAAGTGGAGGCAGAAGGGCAAACCCGTGGCAGGTATCGTCGTCGAGCCCATCCAGTCGGAGGGAGGAGACAACCACGCATCACCCGACTTCTTCATCAAACTGCGCAGCGTCGCTCGCAAGCATGGATGCGCTTTCCTCGTGGATGAGGTTCAAACAGGGGGCGGAGCCACCGGAAAGTTCTGGGCCCACGAGCACTGGGGCACGGACGACTCCGCCGATCTCGTCTCCTTCAGCAAGAAGATGCTCACAGGAGGCTACTACCACAGAGACGAGCTGCAGCCTGATAAGGGTTACAGAATCTTCAACACGTGGATGGGAGACCCGTCGAAGAACCTGCTCCTCTCCGAGGTGCTGAACGTCATCAGAAGAGAGAACCTTCTGGAAGAAGTGACTCgctctgggaaggctttgctGCAGGGACTTTATGAGCTGCAGtCTCGGTATCCTCACCTGCTAAGTCGAGCTCGTGGTCAGGGCACCTTCTGCGCCGTCGATGCCCGTGATGATGTCACCAGGGACAACCTTCTGCTCAAAATCAGAGACAAGGGCGTTCTCCTGGGCGGCTGCGGCGAAAAATCCATCCGCTTCCGTCCCGCTCTCGTCTTCAAAGAGTACCACGCTCATCAGTTCCTCAACATCTTCAACGACGTGCTCTCCGAGTACAAATAAAGAGTCGTGGAGCTTCAAGAAGCAGAGGAGAACAAGCACAATGGTCCAAACCCCCCGAAGCAGGCGGTTCCTCCCCTTCACAGTCTCCCActcacctttttttcttttttttttttttttctaaccttctacttcactttttaattatttgtttaatttcagtCACTATATCTCTCAATGTAAAGAGCACAATGAGATCCGGAGTATTACCGTGGatcagtatcagtacactcAAGTTTCATTTACAAAAACACGTGTGGTCCTAGGGATTGATGCGCCAGTCGTCAGCGTTAAAGGAGTAAATCACACAGTTGTCTGTTTTatatgtaaagatttttttaaagcagcacGATGGttggataaacacacacacacacacacacacatttatatataggTTCAGCAGGAGCTCATTACTGGGCcagaaaattgtaaataaaagaaattctattattattattattatcagaagTATAAAACCactaaaattacaaactgcacctttacaTGATGATGGATTTCCTCAGTTTCAGAGTCAGACTTAAGCACATGAATAAGCTGTAAATCCAGGACAAGCTCGATTATAACCCCTCTCCTACCTCAGAGCAAAGCGAGGCTCTGTAAACGCTAAGAAGCCCTCATGTAAAAATTCAGAGCTTGTTAAACTGATGGGGCGACGCAGAAGAATCCGAATGAGTCACTGTGATTATTAGGTGTGTATCATTTCATTGTTatggtttttgtattttttttttgacttattgCCAGCTATTGAATGACTTTATAAATGGTCAGGCTTTCCCACAATGCTTTACTTCAGCACAGGAAGCTCTTaatcaaacactcacacacacagctcatgaGAGGAATTGAACTTCGCATGAAAATATTTCTCACATATTTTctaaacacaaatgaaagacggttctctctcgttctctccgTAGGGTATTTTAGAACCAGAGCTGAAATATCAGCACGGCCGTGTGGTTTACCCTAACTCTAATCCTGGAGTATTTTATAGGGAATAAAATGTCACGGAATCCTTCGAGATAGCCAAATACGCCAGCTGTGATGAGCTTTTCAGGCTACTACTGGCTCTAATACCTCACACTCAGTATCATATCAGtattaacacaatattttattgtaGTCAGCTAGATAACAGGTCTTTCCTGAGTTCACGCAGGGGCTGTAAGGTGCGTTTCCATCGTCATCCAGGAACCTTTTGAGGAACTAAAGAGTTGACGAGCAACAAAGCGAACGTGGAAGAGGCTGAGACTGAACTTGctgtggtgttgtgtatgttgtttTGAATGTTAATGAGAGTGTTAAATTAGCTACACACGGACAAAGCACAATTTCGCACAAAAAGCCTTTTTAGATTTGTGTGACGAGCCACTAgaagcatacaaacacacagagtcagCCATTTTGTAAAGCATACACATGTCCAAATAAGGATCCGACACTctgtgtttgggggaaaaaagatatTAAACTGTACCATTGCTTGTCAATGGAGTGGTATTCTTCATTTTTGGTCTTTCATCCACCAGGGAAAGTGAAGTGtgcctttttttattaatttaataaataattagatcTTTAACTTAGCTGTAGTActttaaataagatttaaacGTACATTATAGATGAAGGATCCATAGTATCCATACTGAAGGTATGAAAGGCCTAGCTGTACAAACAGTGGTACAGTttcatgctctttttttttttcccctcctaaGAATGTACAGCAAGTTCTCTAATAATAATTCAGCCTTGTTTGTTTACATTGGAAACATTctttggagggaaaaaaaagttcctgTAACAGAAAGGTGGTTTTAGAGTGCGGAAAACACTACAGTGTGCACACCACATGTGGACTCCAGGATCATGGTCACACACCACACTTCTTTAAGCTCAAGCGAATGATCTCCTAAACCAAAAAATAGGTATTTTAACGTTGAATCCGTGTACCAGGGGTTAATCTTCGACCAGAAATCCGGCTCATGTTCTCCTGCGATTCGCCCTAAAGCCAAACTGCTCAGTGTCTTAACTTTGTGCCCGTATGTTTTAGGGACTTGctcgtattattattattttttaagagaataaaaaagcaCGATACAGATACAGACGACAGAACACCATTCAGACATAATTCTCTCCCCTCCAGttttttttgaaatttaaaaCTGCTATTCATCAACCTTTTTCATCAGTCACTAAAGCGCATCAGTGAGACATTAACGTCTTCTTAACTACATGTGTAGATTATTTTTCAGATAAATGTTGGTAATGCTGTACAGTGTCCCGTTTGTCCATGTAAAGTATTATGAAGGTAGttaaaaaatttctttttcttttgttaatatAGTGGACAGATGGAGTGTACAGATGTAGAAAATGCGTAAAACTGTTcagatagagaaaaagaaaatcccaATATATGCGATGACTCTGTGCCCGTCTGTTTTTGGCCGAGTAAGTATCGTATAGAGTTGTGAATTATGTTAACCACTAACgacaattaaagaaaaaaagatcattGCCATGTTTGTTTACACTACTGTGTGAAATAggttataaaattaattattccCTGGTTAAATATTGTCTAAGCAATATAAATGTACTCAGaaataaatctgacattttttgactttga

Function

GO: NA

KEGG:

id description
K13524 ABAT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579340.1 lncRNA upstream 22353 24341688 ~ 24363384 (+) True LOC117598769
XR_004579339.1 lncRNA upstream 40834 24341688 ~ 24344903 (+) False LOC117598769
TU255907 lncRNA upstream 55743 24305952 ~ 24329994 (+) False rbfox1
TU255908 lncRNA upstream 55743 24305952 ~ 24329994 (+) False rbfox1
TU255727 lncRNA upstream 465366 23919087 ~ 23920371 (+) False fbxl16
TU256072 lncRNA downstream 5220 24423766 ~ 24444172 (+) True G216174
TU256065 lncRNA downstream 26527 24445073 ~ 24447468 (+) True G216171
TU256086 lncRNA downstream 40839 24459385 ~ 24461889 (+) True G216185
TU256084 lncRNA downstream 43388 24461934 ~ 24462851 (+) False G216185
TU256059 lncRNA downstream 51513 24470059 ~ 24473172 (+) True G216167
XM_026947113.2 mRNA upstream 1843 24365746 ~ 24383894 (+) False mettl22
XM_026947111.2 mRNA upstream 1843 24365761 ~ 24383894 (+) True mettl22
XM_034309944.1 mRNA upstream 55737 24191755 ~ 24330000 (+) False rbfox1
XM_034309953.1 mRNA upstream 55737 24252205 ~ 24330000 (+) False rbfox1
XM_034309948.1 mRNA upstream 55737 24276329 ~ 24330000 (+) False rbfox1
XM_026947091.2 mRNA downstream 111223 24529769 ~ 24539117 (+) True si:ch211-157c3.4
XM_034310263.1 mRNA downstream 111251 24529797 ~ 24539117 (+) False si:ch211-157c3.4
XM_026947098.2 mRNA downstream 150687 24569233 ~ 24575461 (+) True c13h16orf72
XM_026947095.2 mRNA downstream 392534 24811080 ~ 24829473 (+) True atf7ip2
XM_026947115.2 mRNA downstream 448854 24867400 ~ 24895480 (+) True nubp1
XR_004579369.1 other upstream 57777 24191753 ~ 24327960 (+) False rbfox1
XR_004579370.1 other upstream 57777 24191753 ~ 24327960 (+) False rbfox1
TU255678 other upstream 637670 23742555 ~ 23748067 (+) False igfbp7
XR_004579446.1 other upstream 644753 23731454 ~ 23740984 (+) True LOC113546919
TU255420 other upstream 1215519 23141752 ~ 23170218 (+) False G215621
TU256099 other downstream 38524 24457070 ~ 24458004 (+) True G216197
TU256100 other downstream 38524 24457070 ~ 24458004 (+) False G216197
TU256141 other downstream 111133 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256462 other downstream 378708 24797254 ~ 24797678 (+) True G216515
trnai-uau_7 other downstream 936230 25354776 ~ 25354868 (+) True trnai-uau_7

Expression Profile