RNA id: XM_034309962.1


Basic Information

Item Value
RNA id XM_034309962.1
length 4258
RNA type mRNA
GC content 0.52
exon number 22
gene id nbr1b
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2239609 ~ 2258256 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTCAGCGCCGGACGTCGCCCGGTCACGTGACTCCGTGGGCGTGTTTACAAGCGCTGATGTAAACACAGAAGACGGTTTCCGAAGCCTAGTCCTGTTTAATCGTCTGGTTGTTTTTCTGAAGCGTGTTAATCGTGTGTAGTCATCTATGCAGCGGCTCGGACGCCGGTATTAAGGCGCCATGGACTTGTACATCAACCTGAAGGTGAATTTTCGGGGCAACACGAAGAGTTTCTTGCTGTCCGGCTCCGAGACGAAGAGCTGGGAGTCTATGGAGGCCACGGTGAAGAGATCTTTCGGCTTGTGCAGTCTACAGCTGACGTACTTCGATGAGGAAAACGAAGAGGTGTCTGTCAACAGCCAGCtggaGTATGAAGAGGCTCTAAAGAGCGCAGCGCGGCAGGGCAACAGGCTGCAGATGAACGTGTATGAGAGCAGAGGGACGACCGGACGAGTTCCCGGTCCCGTCCCAGGCCCGGGTTTGTCCCAGGTGAAGTCCGGAAGCCTGACGGAGCCGAAGAAAGGATTCCGGCCTCCTCAGCACTGCCCGAGCCTGGCACAGGCGGTGAGCCGAAAAGTTCAGGCTGCTGTGCCCGAGGAGGGTTTAgtgACTCTTAATGAGCTAAAGGGCGGTAAAGCAGAGGATAAGACGCCTCCAGCCTGGTTCACCTCCTACATGGAGAAGTTTAAGGATCAGGTGGTTCGTGAGGCTGTGGAGAAGATCTGCAGGGAGTTTTCAGGCCAGTGCTGCATCCATAAACCCCTGGGAGCCGAGGCTCAGGTGTCCGAGGTCTCCTCCTCCACGCTGCCTGGAGCTCCGAGCTCGGCTCCGGCCTGCAGCAGCTGCAGAGGACAGACGGCGGGCGGAGGATACCAGTGCAGTGTGTGCACATCCTGCACCCTGTGTGAGCCGTGTAGCTTCTCACACGACCCGAGCCACAACCTGGTGAGAGCTCGAACACCTCTCTCCATCCCCGAACGCGGCTCTCCAGCTCCGGATCAGAGCAGGTTCTACAGACGGGGAGACCGCAGCTTTCGCAAGGCCGAGAAACAGCGCTTGAAGGCGGAGAAGCGGCAGCTGAAGGCGGAGGTGAAGGAGATCAGGAAACAGCtgaggatggagaggaggagTCTGCAGTGGGGCTGTGCGGGAGACGGAAACTCCTCTCCTGTGCTGCTACAGCCACGAGCCACGCAGGCCAACAGCCCCGAGCGTCCTAAGCGTCCGTGTCCTCTAGCTGTCCCTGCGATGACGGCGCTGCTGCTGGACGAAAATCTGCCGGACGGATCACGCCTGAGGCCTGGGACCAAATTCATTAAATACTGGAAGATGAAGAACAGCGGCACAATGAGCTGGAACTCGGACACCAAactgaagtTCATGTGGGGGAATCTGGCCGTAGGTTCGGGGGAGAGGTGGAGGGAGGTGTCGGTGCCCACACTGCAACCAGGTCAGgtgggATTAGTCAGCGTGGCTCTGTGTGCTCCCACCCTGGAGGGCACCTACACCTCACACTGGCGCCTGGCGCATGGAGGAGAGCAGTTCGGGCCGCGGGTTTGGTGCAGCATCGTTGTGGATCCCGACGCTCCGACTGCCATCTCCGCTGACGGCCTGCTGGTGTCTCCGTGTGTCACTCCTCAGgAGAAATCAGCTCGGACTTTagagagggaggagaaaaaCCGCACGGCGTCCCGGGAGCCGCTGCTCATCACCGTGGATCAGGACTGCGATCAGGAGTTTTACATTCCGTCTGTGGATCTGCTGACAGCACAGgacTTGCTGTCATTTGAGCTTCTGGACATTAACATAGTGCAGGAGTTGGAGAGCGTTCCCAACAACACTCCCGCAGGTAACACTCCCTCAGatatcACTCCGTGCATTTCTCCTCTGCCCCATGATGCACTGCTGCAGGACAAAACTCCTCCAGGGCTCATTCAGGAGGAAGCTGGAGAGGAAGCCCAAGCAGTCAATAGCattctggacGTTGCTCAGGCTCCAGAGTTAGGAGGAGTTCCCGCCCAAGAGAAAGGAGAGGAGGACGTGATTGGCCGTCAGTTTGTGAGTGAGTCTGTGATTCGTTCCCTCACGCTCGGGGGAGTGTTAGATCACGGCATCCTGCATGGGAGAGTCACCACCACTGTGTTGCGTCCAGCACCGCAGGGCTCCGTGTCTCTCTGTGAGAGGAGGATGGACAGAATGTCAGAAAGCGCTGATGTTCCGCTCTCAGATCCACCTAAAGCCGAGCCGGAGGAACTTCCGGAtccttctcctctcatctcCATTCCTGCTGAACACATCACTGCAGATGAAGGGAACGAGTCAGATATCGAGCGAATCGTTGTGGATCCTACTGCTGGAGGCGAGCAGtttgaggaggaagaggaccccgaggagaggaagaggaataAGAAGGAggtggagaaggagaaaaagaaagcgAAAGATGCAGAAGAGGGTAAAGAGAGTCGCAGCAGGACGTCGTCCGCCTCCTCGGAGGATTACATCATCATCCTGCCCGACTGTTTCGACACGACCCGTCCTCTCGGAGAGTCCATGTACAGCTCGGCTGTGTCCCAGCAGGGAGACGAGAGCCCAGAGCGTGTTCGCGCAGACGCTAACGACATGCTGTGCGCATCGCAGACTCTGGATTCGGTGCCGCTCACTCCTGTGATCGTAGCTGCGCCCAGACCTTCAGCCAagtccagCTCAGAGACGGAGGAGCAGCTCGGAGCAGCAGAGATGCCACAGGAGGAGGAGCTAAATCAGCCTGGAGgcaaagaggaggaggagccaGAAGAtcatgATTCTGCATCCAGTCCATCAGACACGGCGAACTCTTGCACTGCTGCTGACTCGGAGATCCAGGAGCTGAAAGCGAACAGTATAACAGGAGGTCTGGTGAAGGGCGCTCTGTCCGTGGCAGCCTCTGCGTATAAGGCTCTGTTTACTGGACAGTCCGGCCCTGAGCAGcTTCCTGAAGAAGCAGCCACTCAGGATGCCATGATGGCCGTCCTGGTAGAGATGGGCTTCGCTGATCGGGCGCTGAATCAGCGTTTGCTGCAAAAACACGGCCCGAACCTCCTGGACGTCGTAAACGAACTCGTGCACATGCAGGACAACGACTGGTACACCACCCGCTACTGACACACTCGCATAATCTacttcctcttttctcctcgtctcttcttcttctgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagacagacagacgtgGACTAGGATCCAGTCTGGAGTGTTTCTGTGGGCCATTTTAGGGAAACAGGGATCAAATCCAGATTAGAGAACTCATGAGAATTCCTCTTCAGCATTCCCAGTGTTTGTCAGAGTGAATTGATAAAATGCGTTTACGTTCGTGTCGTTATAGGAATCGTTGTTAGACTGGCGgtcaaaagtttttggacaccttgcaaattttttttttttaaacattttcagagCAATGTTCTAGAGCTGTGCGAGAGATAGGGACAAACGTTgatacagagaacacagagtGCACTTAAGAAGACGTAGACCTGTGCCGTTGTAGAAGTgctcattttttacttttttttttttttctgtaatattttgttTCTCTTCACATTCCACCAgcttcaataaaatatctgctcaggCAGAGGAGGACAAATCATTAAGTTATTAGCAAGGAAAAGGTCCAAAGTTTGGTAAATGTTTTCAGGAAAAATCAGGAACAAGTCTCAAAAAGCTGtgcagtttaataaaaaaacttgAAGAGGTCTAGAAAAATCTGGAACAAGGTCTCGGAATTTTTCTGGACAAAAGTCTGGATTGGAAAGCAGTCTTAAACTCTGGAATTTTTCTGGACAAAAgtctggaattaaaaaaaaattaataatttggAACAAGTCTCCAAAAGGTGtggagtttaataaaattatCTGGAATAAGTCGTTAAAAAGGTctggagtttttaaaaaaaaaaaaaaaagatgatctGGAACATGTCAAGGTCTGGAATTAAAAAACTGGCACAATTCTGGAAAACGTGTAGAATTGAAAAAGTATTTTGGAAAAATTACCAGAAAGGATTGGAAAAAATACAAACCTGGAACAAATTTCTGGAGTCTGGAGTTTAATAAAAGATAACCTGGAATAAATCTTAAAAAGGTCtggaattttataaaataatggaACAATCCTGGAAAAAGTCTACAATAAAAATCATTTGGAACAAGTCTAATGTAAA

Function

GO: NA

KEGG:

id description
K17987 NBR1; next to BRCA1 gene 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241588 lncRNA upstream 12445 2224549 ~ 2227164 (+) True G203973
TU241577 lncRNA upstream 41276 2198113 ~ 2198333 (+) True G203965
TU241570 lncRNA upstream 53445 2183237 ~ 2186164 (+) False rundc1
TU241566 lncRNA upstream 80326 2154436 ~ 2159283 (+) True G203955
TU241543 lncRNA upstream 231003 2008401 ~ 2008606 (+) True G203935
TU241581 lncRNA downstream 226 2258482 ~ 2260374 (+) True G203967
TU241612 lncRNA downstream 130728 2388984 ~ 2392499 (+) True G203996
XR_004579376.1 lncRNA downstream 265732 2523988 ~ 2524878 (+) True LOC117598836
TU241988 lncRNA downstream 282858 2541114 ~ 2541458 (+) True G204316
TU241996 lncRNA downstream 286733 2544989 ~ 2736830 (+) False G204323
XM_026917021.2 mRNA upstream 27198 2198749 ~ 2212411 (+) True slc25a39
XM_026917270.2 mRNA upstream 44583 2187365 ~ 2195026 (+) True rpl27
XM_026917227.2 mRNA upstream 55019 2177683 ~ 2184590 (+) True rundc1
XM_034310161.1 mRNA upstream 64998 2130528 ~ 2174611 (+) True grna
XM_034310053.1 mRNA upstream 125540 2092559 ~ 2114069 (+) False bcat2
XM_034310177.1 mRNA downstream 363914 2622170 ~ 2691714 (+) True LOC117598986
XM_026916953.2 mRNA downstream 597140 2855396 ~ 2856253 (+) True hspb9
XM_034309777.1 mRNA downstream 609512 2867768 ~ 2908043 (+) True LOC113528221
XM_034310178.1 mRNA downstream 649916 2908172 ~ 2917545 (+) True LOC117598987
XM_034309769.1 mRNA downstream 656002 2914258 ~ 2983091 (+) True LOC117598765
XR_004579364.1 other upstream 83760 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 354131 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 648534 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 883282 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 1002997 1220512 ~ 1236612 (+) False paqr4a
TU242114 other downstream 745416 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 934456 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 1708502 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 1708502 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 1708502 3966758 ~ 3986284 (+) False limd2